检索结果 - Arif Harmanci

Refine Results
  1. 1
    MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework

    MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework 由 Arif Harmanci, Joel Rozowsky, Mark Gerstein

    出版 2014
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  2. 2
    TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences

    TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences 由 Arif Harmanci, Gaurav Sharma, David H. Mathews

    出版 2011
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  3. 3
    CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data

    CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data 由 Akdes Serin Harmancı, Arif Harmanci, Xiaobo Zhou

    出版 2020
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  4. 4
    Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies

    Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies 由 James C. Bayley, Caroline Hadley, Arif Harmanci, Akdes Serin Harmancı, Tiemo J. Klisch, Akash J. Patel

    出版 2022
    获取全文
    Artigo
    加到收藏夹
    Saved in:
  5. 5
    VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment

    VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment 由 Lukas Habegger, Suganthi Balasubramanian, David Z. Chen, Ekta Khurana, Andrea Sboner, Arif Harmanci, Joel Rozowsky, Declan Clarke, M Snyder, Mark Gerstein

    出版 2012
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  6. 6
    A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

    A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals 由 Jieming Chen, Joel Rozowsky, Timur R. Galeev, Arif Harmanci, Robert R. Kitchen, Jason Bedford, Alexej Abyzov, Yong Kong, Lynne Regan, Mark Gerstein

    出版 2016
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  7. 7
    AlleleSeq: analysis of allele‐specific expression and binding in a network framework

    AlleleSeq: analysis of allele‐specific expression and binding in a network framework 由 Joel Rozowsky, Alexej Abyzov, Jing Wang, Pedro Alves, Debasish Raha, Arif Harmanci, Jing Leng, Robert Bjornson, Yong Kong, Naoki Kitabayashi, Nitin Bhardwaj, Mark A. Rubin, M Snyder, Mark Gerstein

    出版 2011
    获取全文
    Artigo
    加到收藏夹
    Saved in:
  8. 8
    Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma

    Even heterozygous loss of CDKN2A/B greatly accelerates recurrence in aggressive meningioma 由 Abdul Wali Khan, Collin W. English, William Chen, Prazwal Athukuri, James C. Bayley, Vicky Brandt, Arya Shetty, Caroline Hadley, Abrar Choudhury, Hsiang‐Chih Lu, Arif Harmanci, Akdes Serin Harmancı, Stephen T. Magill, David R. Raleigh, Tiemo J. Klisch, Akash J. Patel

    出版 2023
    获取全文
    Carta
    加到收藏夹
    Saved in:
  9. 9
    Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences

    Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences 由 Sushant Kumar, Jonathan Warrell, Shantao Li, Patrick D. McGillivray, Matthew Meyerson, Leonidas Salichos, Arif Harmanci, Alexander Martínez-Fundichely, Calvin Wing Yiu Chan, Morten Muhlig Nielsen, Lucas Lochovsky, Yan Zhang, Xiaotong Li, Shaoke Lou, Jakob Skou Pedersen, Carl Herrmann, Gad Getz, Ekta Khurana, Mark Gerstein

    出版 2020
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  10. 10
    HDAC inhibitors elicit metabolic reprogramming by targeting super-enhancers in glioblastoma models

    HDAC inhibitors elicit metabolic reprogramming by targeting super-enhancers in glioblastoma models 由 Trang Nguyen, Yiru Zhang, Enyuan Shang, Chang Shu, Consuelo Torrini, Junfei Zhao, Elena Bianchetti, Angeliki Mela, Nelson Humala, Aayushi Mahajan, Arif Harmanci, Zhengdeng Lei, Mark Maienschein‐Cline, Catarina M. Quinzii, Mike‐Andrew Westhoff, Georg Karpel‐Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin

    出版 2020
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  11. 11
    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression 由 Dmitri D. Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie Davis, Pablo Prieto, Alexander Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei Hoon See, Meagan Fastuca, Jörg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, M Beer, Cédric Notredame, Roderic Guigó, T Gingeras

    出版 2015
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  12. 12
    ATRT-15. ATRTS HIJACK EPIGENETIC MECHANISMS TO PROMOTE IMMUNOSUPPRESSION AND ESCAPE FROM NK CELL THERAPY

    ATRT-15. ATRTS HIJACK EPIGENETIC MECHANISMS TO PROMOTE IMMUNOSUPPRESSION AND ESCAPE FROM NK CELL THERAPY 由 Jyothishmathi Swaminathan, Ben Ho, Shinji Maegawa, Lei Guo, Álvaro Macedo Laureano, Ben Brugmann, Bridget Kennis, Tara Dobson, Shavali Shaik, Visweswaran Ravikumar, David I. Sandberg, Laurence J.N. Cooper, Wafik Zaky, Soumen Khatua, Lúcia Mariano da Rocha Silla, Dean A. Lee, Arvind Rao, Arif Harmanci, Lin Xu, Annie Huang, Vidya Gopalakrishnan

    出版 2023
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  13. 13
    Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion

    Single-Cell Profiling of CD8+ T Cells in Acute Myeloid Leukemia Reveals a Continuous Spectrum of Differentiation and Clonal Hyperexpansion 由 Poonam N. Desai, Bofei Wang, André Fonseca, Pâmella Borges, Fatima Zahra Jelloul, Patrick K. Reville, Eric Lee, Christopher Ly, Akshay Basi, Jessica L. Root, Natalia Baran, Sean M. Post, Qing Deng, Hanxiao Sun, Arif Harmanci, Jared K. Burks, Javier A. Gomez, Courtney D. DiNardo, Naval Daver, Gheath Alatrash, Marina Konopleva, Michael R. Green, Dinler A. Antunes, P. Andrew Futreal, Dapeng Hao, Hussein A. Abbas

    出版 2023
    获取全文
    Artigo
    加到收藏夹
    Saved in:
  14. 14
    SCOR: A secure international informatics infrastructure to investigate COVID-19

    SCOR: A secure international informatics infrastructure to investigate COVID-19 由 Jean Louis Raisaro, Francesco Marino, Juan Ramón Troncoso-Pastoriza, Raphaëlle Beau‐Lejdstrom, Riccardo Bellazzi, Robert Murphy, Elmer V. Bernstam, Henry E. Wang, Mauro Bucalo, Yong Chen, Assaf Gottlieb, Arif Harmanci, Miran Kim, Yejin Kim, Jeffrey G. Klann, Catherine Klersy, Bradley Malin, Marie Méan, Fabian Praßer, Luigia Scudeller, Ali Torkamani, Julien Vaucher, Mamta Puppala, Stephen T.C. Wong, Milana Frenkel‐Morgenstern, Hua Xu, Baba Maiyaki Musa, Abdulrazaq G. Habib, Trevor Cohen, Adam B. Wilcox, Hamisu M. Salihu, Heidi J. Sofia, Xiaoqian Jiang, Jean‐Pierre Hubaux

    出版 2020
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  15. 15
    Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics

    Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics 由 Ekta Khurana, Yao Fu, Vincenza Colonna, Xinmeng Jasmine Mu, Hyun Min Kang, Tuuli Lappalainen, Andrea Sboner, Lucas Lochovsky, Jieming Chen, Arif Harmanci, Jishnu Das, Alexej Abyzov, Suganthi Balasubramanian, Kathryn Beal, Dimple Chakravarty, Daniel Challis, Yuan Chen, Declan Clarke, Laura Clarke, Fiona Cunningham, Uday S. Evani, Paul Flicek, Robert Fragoza, Erik Garrison, Richard A. Gibbs, Zeynep H. Gümüş, Javier Herrero, Naoki Kitabayashi, Yong Kong, Kasper Lage, Vaja Liluashvili, Steven M. Lipkin, Daniel G. MacArthur, Gábor Marth, Donna M. Muzny, Tune H. Pers, Graham R. S. Ritchie, Jeffrey Rosenfeld, Cristina Sisu, Xiaomu Wei, Michael Wilson, Yali Xue, Fuli Yu, Emmanouil T. Dermitzakis, Haiyuan Yu, Mark A. Rubin, Chris Tyler‐Smith, Mark Gerstein

    出版 2013
    获取全文
    Artigo
    加到收藏夹
    Saved in:
  16. 16
    Architecture of the human regulatory network derived from ENCODE data

    Architecture of the human regulatory network derived from ENCODE data 由 Mark Gerstein, Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon‐Kiu Yan, Chao Cheng, Xinmeng Jasmine Mu, Ekta Khurana, Joel Rozowsky, Roger P. Alexander, Renqiang Min, Pedro Alves, Alexej Abyzov, Nick Addleman, Nitin Bhardwaj, Alan P. Boyle, Philip Cayting, Alexandra Charos, David Z. Chen, Yong Cheng, Declan Clarke, Catharine Eastman, Ghia Euskirchen, Seth Frietze, Yao Fu, Jason Gertz, Fabian Grubert, Arif Harmanci, Preti Jain, Maya Kasowski, Phil Lacroute, Jing Leng, Lian Jin, Hannah Monahan, Henriette O’Geen, Zhengqing Ouyang, E. Christopher Partridge, Dorrelyn Patacsil, Florencia Pauli, Debasish Raha, Lucı́a Ramı́rez, Timothy E. Reddy, Brian D. Reed, Minyi Shi, Teri Slifer, Jing Wang, Linfeng Wu, Xinqiong Yang, Kevin Y. Yip, Gili Zilberman-Schapira, Serafim Batzoglou, Arend Sidow, Peggy Farnham, R Myers, Sherman M. Weissman, M Snyder

    出版 2012
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  17. 17
    An integrative ENCODE resource for cancer genomics

    An integrative ENCODE resource for cancer genomics 由 Jing Zhang, Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray, Hongbo Yang, Jason Liu, Matthew Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant S. Emani, Yucheng Yang, Timur R. Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera‐Mulia, Jessika Adrian, James R. Broach, Michael J. Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla‐García, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J. Klein, M Snyder, David M. Gilbert, Kevin Y. Yip, Chao Cheng, Feng Yue, X. Shirley Liu, Kevin P. White, Mark Gerstein

    出版 2020
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  18. 18
    Comparative analysis of the transcriptome across distant species

    Comparative analysis of the transcriptome across distant species 由 Mark Gerstein, Joel Rozowsky, Koon‐Kiu Yan, Daifeng Wang, Chao Cheng, James B. Brown, Carrie Davis, LaDeana Hillier, Cristina Sisu, Jingyi Jessica Li, Baikang Pei, Arif Harmanci, Michael O. Duff, Sarah Djebali, Roger P. Alexander, B. Alver, Raymond K. Auerbach, Kimberly Bell, Peter J. Bickel, Max E. Boeck, Nathan P. Boley, Benjamin W. Booth, Lucy Cherbas, Peter Cherbas, Chao Di, Alexander Dobin, Jörg Drenkow, Brent Ewing, Gang Fang, Megan Fastuca, Elise A. Feingold, Adam Frankish, Guanjun Gao, Peter J. Good, Roderic Guigó, Ann S. Hammonds, Jennifer Harrow, Roger A. Hoskins, Cédric Howald, Long Hu, Haiyan Huang, Tim Hubbard, Chau Huynh, Sonali Jha, Dionna M. Kasper, Masaomi Kato, Thomas C. Kaufman, Robert R. Kitchen, Erik Ladewig, Julien Lagarde, Eric C. Lai, Jing Leng, Zhi John Lu, Michael J. MacCoss, Gemma E. May, Rebecca McWhirter, Gennifer E. Merrihew, David M. Miller, A Mortazavi, Rabi Murad, Brian Oliver, Sara Olson, Peter J. Park, Michael J. Pazin, Norbert Perrimon, Dmitri D. Pervouchine, V Reinke, Alexandre Reymond, Garrett Robinson, Anastasia Samsonova, Gary Saunders, Felix Schlesinger, Anurag Sethi, Frank J. Slack, William C. Spencer, Marcus H. Stoiber, Pnina Strasbourger, Andrea Tanzer, Owen Thompson, Kenneth H. Wan, Guilin Wang, Huaien Wang, Kathie L. Watkins, Jiayu Wen, Kejia Wen, Chenghai Xue, Li Yang, Kevin Y. Yip, Chris Zaleski, Yan Zhang, Henry Zheng, Steven E. Brenner, Brenton R. Graveley, S Celniker, T Gingeras, R Waterston

    出版 2014
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:
  19. 19
    Integrative functional genomic analysis of human brain development and neuropsychiatric risks

    Integrative functional genomic analysis of human brain development and neuropsychiatric risks 由 Mingfeng Li, Gabriel Santpere, Yuka Imamura Kawasawa, Oleg V. Evgrafov, Forrest O. Gulden, Sirisha Pochareddy, Susan M. Sunkin, Zhen Li, Yurae Shin, Ying Zhu, André M. M. Sousa, Donna M. Werling, Robert R. Kitchen, Hyo Jung Kang, Mihovil Pletikos, Jinmyung Choi, Sydney K. Muchnik, Xuming Xu, Daifeng Wang, Belén Lorente-Galdós, Shuang Liu, Paola Giusti‐Rodríguez, Hyejung Won, Christiaan de Leeuw, Antonio F. Pardiñas, Ming Hu, Fulai Jin, Yun Li, Michael J. Owen, Michael O’Donovan, James Walters, Daniëlle Posthuma, Mark A. Reimers, Pat Levitt, Daniel R. Weinberger, Thomas M. Hyde, Joel E. Kleinman, Daniel H. Geschwind, Michael Hawrylycz, Matthew W. State, Stephan Sanders, Patrick F. Sullivan, Mark Gerstein, Ed S. Lein, James A. Knowles, Nenad Šestan, A. Jeremy Willsey, Aaron Oldre, Aaron Szafer, Adrian Camarena, Adriana Cherskov, Alexander W. Charney, Alexej Abyzov, Alexey Kozlenkov, Alexias Safi, Allan R. Jones, Allison E. Ashley‐Koch, Amanda Ebbert, Amanda J. Price, Amanda Sekijima, Amira Kefi, Amy Bernard, Anahita Amiri, Andrea Sboner, Andrew E. Clark, Andrew E. Jaffe, Andrew T.N. Tebbenkamp, Andy J. Sodt, Angie Guillozet‐Bongaarts, Angus C. Nairn, Anita Carey, Anita Hüttner, Ann Chervenak, Anna Szekely, Annie W. Shieh, Arif Harmanci, Barbara K. Lipska, Becky C. Carlyle, Ben W. Gregor, Bibi Kassim, Brooke Sheppard, Candace Bichsel, Chang-Gyu Hahn, Chang-Kyu Lee, Chao Chen, Chihchau L. Kuan, Chinh Dang, Chris Lau, Christine Cuhaciyan, Christoper Armoskus, Christopher E. Mason, Chunyu Liu, Cliff Slaughterbeck, Crissa Bennet, Dalila Pinto, Damon Polioudakis, Daniel Franjic, Daniel J. Miller, Darren Bertagnolli, David A. Lewis

    出版 2018
    获取全文
    Artigo
    加到收藏夹
    Saved in:
  20. 20
    Integrative pathway enrichment analysis of multivariate omics data

    Integrative pathway enrichment analysis of multivariate omics data 由 Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S. Fox, Helen Zhu, Diala Abd-Rabbo, Miles W. Mee, Paul C. Boutros, Federico Abascal, Samirkumar B. Amin, Gary D. Bader, Rameen Beroukhim, Johanna Bertl, Keith A. Boroevich, Søren Brunak, Peter J. Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach, J. Lynn Fink, Nuno A. Fonseca, Joan Frigola, Carlo Gambacorti‐Passerini, Dale W. Garsed, Mark Gerstein, Gad Getz, Abel González-Pérez, Qianyun Guo, Marta Gut, David Haan, Mark Hamilton, Nicholas J. Haradhvala, Arif Harmanci, Mohamed Helmy, Carl Herrmann, Julian M. Hess, Asger Hobolth, Ermin Hodzic, Chen Hong, Henrik Hornshøj, Keren Isaev, José M. G. Izarzugaza, Rory Johnson, Todd A. Johnson, Malene Juul, Randi Istrup Juul, André Kahles, Abdullah Kahraman, Manolis Kellis, Ekta Khurana, Jaegil Kim, Jong K. Kim, Young-Wook Kim, Jan Komorowski, Jan O. Korbel, Sushant Kumar, Andrés Lanzós, Michael S. Lawrence, Dong-Hoon Lee, Kjong-Van Lehmann, Shantao Li, Xiaotong Li, Ziao Lin, Eric Minwei Liu, Lucas Lochovsky, Shaoke Lou, Tobias Madsen, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Yosef E. Maruvka, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Loris Mularoni, Hidewaki Nakagawa, Morten Muhlig Nielsen, Keunchil Park, Kiejung Park, Jakob Skou Pedersen, Oriol Pich, Tirso Pons, Sergio Pulido-Tamayo, Benjamin J. Raphael, Iker Reyes-Salazar, Matthew A. Reyna, Esther Rheinbay, Mark A. Rubin, Carlota Rubio-Pérez, Radhakrishnan Sabarinathan, S. Cenk Şahinalp, Gordon Saksena, Leonidas Salichos, Chris Sander

    出版 2020
    获取全文 获取全文
    Artigo
    加到收藏夹
    Saved in:

检索工具: