检索结果 - Aparna Nathan

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  1. 1
    Tissue engineered perivascular endothelial cell implants regulate vascular injury.

    Tissue engineered perivascular endothelial cell implants regulate vascular injury. 由 Aparna Nathan, Matthew A. Nugent, Elazer R. Edelman

    出版 1995
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  2. 2
    Presto scales Wilcoxon and auROC analyses to millions of observations

    Presto scales Wilcoxon and auROC analyses to millions of observations 由 Ilya Korsunsky, Aparna Nathan, Nghia Millard, Soumya Raychaudhuri

    出版 2019
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  3. 3
    Methods and Insights from Single-Cell Expression Quantitative Trait Loci

    Methods and Insights from Single-Cell Expression Quantitative Trait Loci 由 Joyce B. Kang, Alessandro Raveane, Aparna Nathan, Nicole Soranzo, Soumya Raychaudhuri

    出版 2023
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  4. 4
    IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation

    IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation 由 Fan Zhang, Joseph Mears, Lorien Shakib, Jessica I. Beynor, Sara Shanaj, Ilya Korsunsky, Aparna Nathan, Laura T. Donlin, Soumya Raychaudhuri

    出版 2021
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  5. 5
    Efficient and precise single-cell reference atlas mapping with Symphony

    Efficient and precise single-cell reference atlas mapping with Symphony 由 Joyce B. Kang, Aparna Nathan, Kathryn Weinand, Fan Zhang, Nghia Millard, Laurie Rumker, D. Branch Moody, Ilya Korsunsky, Soumya Raychaudhuri

    出版 2021
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  6. 6
    Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics

    Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics 由 Yakir Reshef, Laurie Rumker, Joyce B. Kang, Aparna Nathan, Ilya Korsunsky, Samira Asgari, Megan Murray, D. Branch Moody, Soumya Raychaudhuri

    出版 2021
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  7. 7
    Reproducible single cell annotation of programs underlying T-cell subsets, activation states, and functions

    Reproducible single cell annotation of programs underlying T-cell subsets, activation states, and functions 由 Dylan Kotliar, Michelle Curtis, Ryan Agnew, Kathryn Weinand, Aparna Nathan, Yuriy Baglaenko, Yu Zhao, Pardis C. Sabeti, Deepak A. Rao, Soumya Raychaudhuri

    出版 2024
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  8. 8
    Repertoire analyses reveal T cell antigen receptor sequence features that influence T cell fate

    Repertoire analyses reveal T cell antigen receptor sequence features that influence T cell fate 由 Kaitlyn A. Lagattuta, Joyce B. Kang, Aparna Nathan, Kristen E. Pauken, A. Helena Jonsson, Deepak A. Rao, Arlene H. Sharpe, Kazuyoshi Ishigaki, Soumya Raychaudhuri

    出版 2022
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  9. 9
    Granzyme K drives a newly-intentified pathway of complement activation

    Granzyme K drives a newly-intentified pathway of complement activation 由 C. Donado, A. Helena Jonsson, Erin Theisen, Fan Zhang, Aparna Nathan, Karishma Vijay Rupani, Dominique Jones, Soumya Raychaudhuri, Daniel F. Dwyer, Michael B. Brenner

    出版 2024
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  10. 10
    Single-cell eQTL models reveal dynamic T cell state dependence of disease loci

    Single-cell eQTL models reveal dynamic T cell state dependence of disease loci 由 Aparna Nathan, Samira Asgari, Kazuyoshi Ishigaki, Cristian Valencia, Tiffany Amariuta, Yang Luo, Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Alkes L. Price, Leonid Lecca, Megan Murray, D. Branch Moody, Soumya Raychaudhuri

    出版 2022
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  11. 11
    Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions

    Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions 由 María Gutiérrez‐Arcelus, Nikola C. Teslovich, Alex R. Mola, Rafael B. Polidoro, Aparna Nathan, Hyun Kim, Susan Hannes, Kamil Slowikowski, Gerald F. Watts, Ilya Korsunsky, Michael B. Brenner, Soumya Raychaudhuri, Patrick J. Brennan

    出版 2019
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  12. 12
    Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease

    Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease 由 Aparna Nathan, Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Kazuyoshi Ishigaki, Samira Asgari, Chuan-Chin Huang, Yang Luo, Zibiao Zhang, Kattya Lopez, Cecilia S. Lindestam Arlehamn, J. Ernst, Judith Jiménez, Roger Calderón, Leonid Lecca, Ildiko Van Rhijn, D. Branch Moody, Megan Murray, Soumya Raychaudhuri

    出版 2021
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  13. 13
    High-dimensional phenotyping to define the genetic basis of cellular morphology

    High-dimensional phenotyping to define the genetic basis of cellular morphology 由 Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A. Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P. Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin Eggan, Marzieh Haghighi, Steven A. McCarroll, Luke J. O’Connor, Anne E. Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri

    出版 2024
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  14. 14
    BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain

    BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain 由 Mohammad Reza Pourhaghighi, Peter E.A. Ash, Sadhna Phanse, Florian Goebels, Lucas ZhongMing Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed Taha Moutaoufik, Ramy Malty, Edyta Małolepsza, Kalliopi Tsafou, Aparna Nathan, Graham L. Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

    出版 2020
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  15. 15
    Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes

    Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes 由 Fan Zhang, A. Helena Jonsson, Aparna Nathan, Nghia Millard, Michelle Curtis, Qian Xiao, María Gutiérrez‐Arcelus, William Apruzzese, Gerald F. Watts, Dana Weisenfeld, Saba Nayar, Javier Rangel‐Moreno, Nida Meednu, Kathryne E. Marks, Ian Mantel, Joyce B. Kang, Laurie Rumker, Joseph Mears, Kamil Slowikowski, Kathryn Weinand, Dana E. Orange, Laura Geraldino‐Pardilla, Kevin D. Deane, Darren Tabechian, Arnoldas Čeponis, Gary S. Firestein, Mark Maybury, Ilfita Sahbudin, Ami Ben‐Artzi, Arthur M. Mandelin, Alessandra Nerviani, Myles Lewis, Felice Rivellese, Costantino Pitzalis, Laura B. Hughes, Diane Horowitz, Edward F. DiCarlo, Ellen M. Gravallese, Brendan F. Boyce, Larry W. Moreland, Susan M. Goodman, Harris Perlman, V. Michael Holers, Katherine P. Liao, Andrew Filer, Vivian P. Bykerk, Kevin Wei, Deepak A. Rao, Laura T. Donlin, Jennifer H. Anolik, Michael B. Brenner, Soumya Raychaudhuri

    出版 2023
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  16. 16
    Cellular deconstruction of inflamed synovium defines diverse inflammatory phenotypes in rheumatoid arthritis

    Cellular deconstruction of inflamed synovium defines diverse inflammatory phenotypes in rheumatoid arthritis 由 Fan Zhang, A. Helena Jonsson, Aparna Nathan, Kevin Wei, Nghia Millard, Qian Xiao, María Gutiérrez‐Arcelus, William Apruzzese, Gerald F. Watts, Dana Weisenfeld, Joyce B. Kang, Laurie Rumker, Joseph Mears, Kamil Slowikowski, Kathryn Weinand, Dana E. Orange, Javier Rangel‐Moreno, Laura Geraldino‐Pardilla, Kevin D. Deane, Darren Tabechian, Arnold Ceponis, Gary S. Firestein, Mark Maybury, Ilfita Sahbudin, Ami Ben‐Artzi, Arthur M. Mandelin, Alessandra Nerviani, Felice Rivellese, Costantino Pitzalis, Laura B. Hughes, Diane Horowitz, Edward F. DiCarlo, Ellen M. Gravallese, Brendan F. Boyce, Larry W. Moreland, Susan M. Goodman, Harris Perlman, V. Michael Holers, Katherine P. Liao, Andrew Filer, Vivian P. Bykerk, Deepak A. Rao, Laura T. Donlin, Jennifer H. Anolik, Michael B. Brenner, Soumya Raychaudhuri, Jennifer S. Albrecht, Jennifer L. Barnas, Joan M. Bathon, David L. Boyle, S. Louis Bridges, Debbie Campbell, Hayley L. Carr, Adam Chicoine, Andrew Cordle, Michelle Curtis, Patrick Dunn, Lindsy Forbess, Peter K. Gregersen, Joel M. Guthridge, Lionel B. Ivashkiv, Kazuyoshi Ishigaki, Judith A. James, Gregory Keras, Ilya Korsunsky, Amit Lakhanpal, Eddie A. James, Zhihan J. Li, Yuhong Li, Andrew McDavid, Nida Meednu, Ian Mantel, Mandy J. McGeachy, Karim Raza, Yakir Reshef, Christopher T. Ritchlin, William H. Robinson, Saori Sakaue, Jennifer Seifert, Melanie H. Smith, Dagmar Scheel‐Toellner, Paul J. Utz, Michael H. Weisman, Zhu Zhu

    出版 2022
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  17. 17
    The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis

    The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis 由 Kathryn Weinand, Saori Sakaue, Aparna Nathan, A. Helena Jonsson, Fan Zhang, Gerald F. Watts, Majd Al Suqri, Zhu Zhu, Jennifer S. Albrecht, William Apruzzese, Nirmal K. Banda, Jennifer L. Barnas, Joan M. Bathon, Ami Ben‐Artzi, Brendan F. Boyce, David L. Boyle, S. Louis Bridges, Vivian P. Bykerk, Debbie Campbell, Hayley L. Carr, Arnold Ceponis, Adam Chicoine, Andrew Cordle, Michelle Curtis, Kevin D. Deane, Edward F. DiCarlo, Patrick Dunn, Andrew Filer, Gary S. Firestein, Lindsy Forbess, Laura Geraldino‐Pardilla, Susan M. Goodman, Ellen M. Gravallese, Peter K. Gregersen, Joel M. Guthridge, María Gutiérrez‐Arcelus, Siddarth Gurajala, V. Michael Holers, Diane Horowitz, Laura B. Hughes, Kazuyoshi Ishigaki, Lionel B. Ivashkiv, Judith A. James, Joyce B. Kang, Gregory Keras, Ilya Korsunsky, Amit Lakhanpal, James A. Lederer, Zhihan J. Li, Yuhong Li, Katherine P. Liao, Arthur M. Mandelin, Ian Mantel, Mark Maybury, Andrew McDavid, Joseph Mears, Nida Meednu, Nghia Millard, Larry W. Moreland, Alessandra Nerviani, Dana E. Orange, Harris Perlman, Costantino Pitzalis, Javier Rangel‐Moreno, Karim Raza, Yakir Reshef, Christopher T. Ritchlin, Felice Rivellese, William H. Robinson, Laurie Rumker, Ilfita Sahbudin, Dagmar Scheel‐Toellner, Jennifer Seifert, Kamil Slowikowski, Melanie H. Smith, Darren Tabechian, Paul J. Utz, Dana Weisenfeld, Michael H. Weisman, Qian Xiao, Deepak A. Rao, Jennifer H. Anolik, Michael B. Brenner, Laura T. Donlin, Kevin Wei, Soumya Raychaudhuri

    出版 2024
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  18. 18
    Tissue-specific enhancer–gene maps from multimodal single-cell data identify causal disease alleles

    Tissue-specific enhancer–gene maps from multimodal single-cell data identify causal disease alleles 由 Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K. Dey, Karthik A. Jagadeesh, Masahiro Kanai, Gerald F. Watts, Zhu Zhu, Jennifer S. Albrecht, Jennifer H. Anolik, William Apruzzese, Nirmal K. Banda, Jennifer L. Barnas, Joan M. Bathon, Ami Ben‐Artzi, Brendan F. Boyce, David L. Boyle, S. Louis Bridges, Vivian P. Bykerk, Debbie Campbell, Hayley L. Carr, Arnold Ceponis, Adam Chicoine, Andrew Cordle, Michelle Curtis, Kevin D. Deane, Edward F. DiCarlo, Patrick Dunn, Andrew Filer, Gary S. Firestein, Lindsy Forbess, Laura Geraldino‐Pardilla, Susan M. Goodman, Ellen M. Gravallese, Peter K. Gregersen, Joel M. Guthridge, María Gutiérrez‐Arcelus, Siddarth Gurajala, V. Michael Holers, Diane Horowitz, Laura B. Hughes, Kazuyoshi Ishigaki, Lionel B. Ivashkiv, Judith A. James, A. Helena Jonsson, Joyce B. Kang, Gregory Keras, Ilya Korsunsky, Amit Lakhanpal, James A. Lederer, Zhihan J. Li, Yuhong Li, Katherine P. Liao, Arthur M. Mandelin, Ian Mantel, Mark Maybury, Joseph Mears, Nida Meednu, Nghia Millard, Larry W. Moreland, Aparna Nathan, Alessandra Nerviani, Dana E. Orange, Harris Perlman, Costantino Pitzalis, Javier Rangel‐Moreno, Deepak A. Rao, Karim Raza, Yakir Reshef, Christopher T. Ritchlin, Felice Rivellese, William H. Robinson, Laurie Rumker, Ilfita Sahbudin, Jennifer Seifert, Kamil Slowikowski, Melanie H. Smith, Darren Tabechian, Dagmar Scheel‐Toellner, Paul J. Utz, Dana Weisenfeld, Michael H. Weisman, Qian Xiao, Fan Zhang, Michael B. Brenner, Andrew McDavid, Laura T. Donlin, Kevin Wei, Alkes L. Price, Soumya Raychaudhuri

    出版 2024
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  19. 19
    Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium

    Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium 由 Garrett S. Dunlap, Aaron B. Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, A. Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, Jennifer S. Albrecht, William Apruzzese, Jennifer L. Barnas, Joan M. Bathon, Ami Ben‐Artzi, Brendan F. Boyce, S. Louis Bridges, Debbie Campbell, Hayley L. Carr, Arnold Ceponis, Adam Chicoine, Andrew Cordle, Michelle Curtis, Kevin D. Deane, Edward F. DiCarlo, Patrick Dunn, Lindsy Forbess, Laura Geraldino‐Pardilla, Ellen M. Gravallese, Peter K. Gregersen, Joel M. Guthridge, Diane Horowitz, Laura B. Hughes, Kazuyoshi Ishigaki, Lionel B. Ivashkiv, Judith A. James, Joyce B. Kang, Gregory Keras, Ilya Korsunsky, Amit Lakhanpal, Eddie A. James, Yuhong Li, Zhihan J. Li, Katherine P. Liao, Holden Maecker, Arthur M. Mandelin, Ian Mantel, Mark Maybury, Mandy J. McGeachy, Joseph Mears, Alessandra Nerviani, Dana E. Orange, Harris Perlman, Javier Rangel‐Moreno, Karim Raza, Yakir Reshef, Christopher T. Ritchlin, Felice Rivellese, William H. Robinson, Laurie Rumker, Ilfita Sahbudin, Karen Salomon-Escoto, Dagmar Scheel‐Toellner, Jennifer Seifert, Anvita Singaraju, Melanie H. Smith, Paul J. Utz, Kathryn Weinand, Dana Weisenfeld, Michael H. Weisman, Qian Xiao, Zhu Zhu, Vivian P. Bykerk, Laura T. Donlin, Susan M. Goodman, Gary S. Firestein, David L. Boyle, V. Michael Holers, Larry W. Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B. Brenner, Juilee Thakar, Andrew McDavid, Deepak A. Rao, Jennifer H. Anolik

    出版 2024
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  20. 20
    Comprehensive functional genomic resource and integrative model for the human brain

    Comprehensive functional genomic resource and integrative model for the human brain 由 Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fábio C. P. Navarro, Declan Clarke, Mengting Gu, Prashant S. Emani, Yucheng Yang, Min Xu, Michael J. Gandal, Shaoke Lou, Jing Zhang, Jonathan J. Park, Chengfei Yan, Suhn K. Rhie, Kasidet Manakongtreecheep, Holly Zhou, Aparna Nathan, Mette A. Peters, Eugenio Mattei, Dominic Fitzgerald, Tonya M. Brunetti, Jill E. Moore, Yan Jiang, Kiran Girdhar, Gabriel E. Hoffman, Selim Kalaycı, Zeynep H. Gümüş, Gregory E. Crawford, Panos Roussos, Schahram Akbarian, Andrew E. Jaffe, Kevin P. White, Zhiping Weng, Nenad Šestan, Daniel H. Geschwind, James A. Knowles, Mark Gerstein, Allison E. Ashley‐Koch, Gregory E. Crawford, Melanie E. Garrett, Lingyun Song, Alexias Safi, Graham D. Johnson, Gregory A. Wray, Timothy E. Reddy, Fernando S. Goes, Peter P. Zandi, Julien Bryois, Andrew E. Jaffe, Amanda J. Price, Nikolay A. Ivanov, Leonardo Collado‐Torres, Thomas M. Hyde, Emily E. Burke, Joel E. Kleiman, Ran Tao, Joo Heon Shin, Schahram Akbarian, Kiran Girdhar, Yan Jiang, Marija Kundaković, Leanne Brown, Bibi Kassim, Royce Park, Jennifer Wiseman, Elizabeth Zharovsky, Rivka Jacobov, Olivia Devillers, Elie Flatow, Gabriel E. Hoffman, Barbara K. Lipska, David A. Lewis, Vahram Haroutunian, Chang-Gyu Hahn, Alexander W. Charney, Stella Dracheva, Alexey Kozlenkov, Judson Belmont, Diane M. Del Valle, Nancy Francoeur, Evi Hadjimichael, Dalila Pinto, Harm van Bakel, Panos Roussos, John F. Fullard, Jaroslav Bendl, Mads E. Hauberg, Lara M. Mangravite, Mette A. Peters, Yooree Chae, Junmin Peng, Mingming Niu, Xusheng Wang, Maree J. Webster, Thomas G. Beach, Chao Chen, Yi Jiang

    出版 2018
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