Search Results - Anuja Sathe

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  1. 1
    scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

    scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data by José Alquicira‐Hernandez, Anuja Sathe, Hanlee P. Ji, Quan Nguyen, Joseph E. Powell

    Published 2019
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  2. 2
    Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

    Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer by Chi-Yun Wu, Billy T. Lau, Heon Seok Kim, Anuja Sathe, Susan M. Grimes, Hanlee P. Ji, Nancy Zhang

    Published 2021
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  3. 3
    Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells

    Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells by Heon Seok Kim, Susan M. Grimes, Tianqi Chen, Anuja Sathe, Billy T. Lau, Gue‐Ho Hwang, Sangsu Bae, Hanlee P. Ji

    Published 2023
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  4. 4
    Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment

    Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment by Anuja Sathe, Susan M. Grimes, Billy T. Lau, Jiamin Chen, Carlos J. Suarez, Robert J. Huang, George A. Poultsides, Hanlee P. Ji

    Published 2020
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  5. 5
    Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

    Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions by Kaishu Mason, Anuja Sathe, Paul R. Hess, Jiazhen Rong, Chi-Yun Wu, Emma E. Furth, Katalin Suszták, Jonathan Levinsohn, Hanlee P. Ji, Nancy Zhang

    Published 2024
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  6. 6
    Parallel PI3K, AKT and mTOR inhibition is required to control feedback loops that limit tumor therapy

    Parallel PI3K, AKT and mTOR inhibition is required to control feedback loops that limit tumor therapy by Anuja Sathe, Géraldine Chalaud, Immanuel Augustin Oppolzer, Kit Yeng Wong, Margarita von Busch, Sebastian C. Schmid, Zhichao Tong, Margitta Retz, Juergen E. Gschwend, Wolfgang A. Schulz, Roman Nawroth

    Published 2018
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  7. 7
    Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution

    Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution by Noemi Andor, Billy T. Lau, Claudia Catalanotti, Anuja Sathe, Matthew Kubit, Jiamin Chen, Cristina Blaj, Athena M. Cherry, Charles D. Bangs, Susan M. Grimes, Carlos J. Suarez, Hanlee P. Ji

    Published 2020
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  8. 8
    Single-cell analysis can define distinct evolution of tumor sites in follicular lymphoma

    Single-cell analysis can define distinct evolution of tumor sites in follicular lymphoma by Sarah Haebe, Tanaya Shree, Anuja Sathe, Grady Day, Debra K. Czerwinski, Susan M. Grimes, HoJoon Lee, Michael S. Binkley, Steven Long, Brock A. Martin, Hanlee P. Ji, Ronald Levy

    Published 2021
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  9. 9
    Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated <i>SPP1</i>+ Macrophages and Fibroblasts

    Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated <i>SPP1</i>+ Macrophages and Fibroblasts by Anuja Sathe, Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai, Andrew Su, Xiao Tan, HoJoon Lee, Carlos J. Suarez, Quan Nguyen, George A. Poultsides, Nancy Zhang, Hanlee P. Ji

    Published 2022
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  10. 10
    A spatial transcriptomic signature of 26 genes resolved at single-cell resolution characterizes high-risk gastric cancer precursors

    A spatial transcriptomic signature of 26 genes resolved at single-cell resolution characterizes high-risk gastric cancer precursors by Robert J. Huang, Ignacio A. Wichmann, Andrew Su, Anuja Sathe, Miranda V. Shum, Susan M. Grimes, Rithika Meka, Alison Almeda, Xiangqi Bai, Jeanne Shen, Quan Nguyen, Ingrid Luo, Summer S. Han, Manuel R. Amieva, Joo Ha Hwang, Hanlee P. Ji

    Published 2025
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  11. 11
    An expanded universe of cancer targets

    An expanded universe of cancer targets by William C. Hahn, Joel S. Bader, Theodore P. Braun, Andrea Califano, Paul A. Clemons, Brian J. Druker, Andrew J. Ewald, Haian Fu, Subhashini Jagu, Christopher J. Kemp, William Kim, Calvin J. Kuo, Michael T. McManus, Gordon B. Mills, Xiulei Mo, Nidhi Sahni, Stuart L. Schreiber, Jessica A. Talamas, Pablo Tamayo, Jeffrey W. Tyner, Bridget K. Wagner, William A. Weiss, Daniela S. Gerhard, Vlado Dančík, Shubhroz Gill, Bruce K. Hua, Tanaz Sharifnia, Vasanthi S. Viswanathan, Yilong Zou, Filemon S. Dela Cruz, Andrew L. Kung, Brent R. Stockwell, Jesse S. Boehm, Josh Dempster, Robert T. Manguso, Francisca Vázquez, Lee Cooper, Yuhong Du, Andrei A. Ivanov, Sagar Lonial, Carlos S. Moreno, Qiankun Niu, Taofeek K. Owonikoko, Suresh S. Ramalingam, Matthew A. Reyna, Wei Zhou, Carla Grandori, Ilya Shmulevich, Elizabeth M. Swisher, Jitong Cai, Isaac S. Chan, Matthew Dunworth, Yuchen Ge, Dan Georgess, Eloïse M. Grasset, Elodie Henriet, Hildur Knútsdóttir, Michael G. Lerner, Veena Padmanaban, Matthew C. Perrone, Yasir Suhail, Yohannes Tsehay, Manisha Warrier, Quin Morrow, Tamilla Nechiporuk, Nicola Long, Jennifer N. Saultz, Andy Kaempf, Jessica Minnier, Cristina E. Tognon, Stephen E. Kurtz, Anupriya Agarwal, Jordana F. Brown, Kevin Watanabe‐Smith, Tania Q. Vu, Thomas Jacob, Yunqi Yan, Bridget A. Robinson, Evan Lind, Yoko Kosaka, Emek Demir, Joseph Estabrook, Michael Grzadkowski, Olga Nikolova, Ken Chen, Ben Deneen, Han Liang, Michael C. Bassik, Asmita Bhattacharya, Kevin Brennan, Christina Curtis, Olivier Gevaert, Hanlee P. Ji, Kasper Karlsson, Kremena Karagyozova, Yuan‐Hung Lo, Katherine Liu, Michitaka Nakano, Anuja Sathe, Amber R. Smith

    Published 2021
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