Ngā hua rapu - Anshul Kundaje

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  1. 1
    Reverse-complement parameter sharing improves deep learning models for genomics

    Reverse-complement parameter sharing improves deep learning models for genomics mā Avanti Shrikumar, Peyton Greenside, Anshul Kundaje

    I whakaputaina 2017
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Pré-impressão
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  2. 2
    GkmExplain: fast and accurate interpretation of nonlinear gapped k-mer SVMs

    GkmExplain: fast and accurate interpretation of nonlinear gapped k-mer SVMs mā Avanti Shrikumar, Eva Prakash, Anshul Kundaje

    I whakaputaina 2019
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  3. 3
    Characterization of the direct targets of<scp>FOXO</scp>transcription factors throughout evolution

    Characterization of the direct targets of<scp>FOXO</scp>transcription factors throughout evolution mā Ashley E. Webb, Anshul Kundaje, Anne Brunet

    I whakaputaina 2016
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  4. 4
    Denoising genome-wide histone ChIP-seq with convolutional neural networks

    Denoising genome-wide histone ChIP-seq with convolutional neural networks mā Pang Wei Koh, Emma Pierson, Anshul Kundaje

    I whakaputaina 2017
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  5. 5
    The ENCODE Blacklist: Identification of Problematic Regions of the Genome

    The ENCODE Blacklist: Identification of Problematic Regions of the Genome mā Haley M. Amemiya, Anshul Kundaje, Alan P. Boyle

    I whakaputaina 2019
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  6. 6
    Umap and Bismap: quantifying genome and methylome mappability

    Umap and Bismap: quantifying genome and methylome mappability mā Mehran Karimzadeh, Carl Ernst, Anshul Kundaje, Michael M. Hoffman

    I whakaputaina 2018
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  7. 7
    Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts

    Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts mā Surag Nair, Daniel Sunwook Kim, Jacob Perricone, Anshul Kundaje

    I whakaputaina 2019
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  8. 8
    MTSplice predicts effects of genetic variants on tissue-specific splicing

    MTSplice predicts effects of genetic variants on tissue-specific splicing mā Jun Cheng, Muhammed Hasan Çelik, Anshul Kundaje, Julien Gagneur

    I whakaputaina 2021
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  9. 9
    Deciphering the impact of genetic variation on human polyadenylation using APARENT2

    Deciphering the impact of genetic variation on human polyadenylation using APARENT2 mā Johannes Linder, Samantha E. Koplik, Anshul Kundaje, Georg Seelig

    I whakaputaina 2022
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  10. 10
    Large-Scale Quality Analysis of Published ChIP-seq Data

    Large-Scale Quality Analysis of Published ChIP-seq Data mā Georgi K. Marinov, Anshul Kundaje, Peter J. Park, B Wold

    I whakaputaina 2013
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  11. 11
    Predicting genetic regulatory response using classification

    Predicting genetic regulatory response using classification mā Manuel Middendorf, Anshul Kundaje, Chris Wiggins, Yoav Freund, Christina Leslie

    I whakaputaina 2004
    Whiwhi kuputuhi katoa
    Artigo
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  12. 12
    Discovering epistatic feature interactions from neural network models of regulatory DNA sequences

    Discovering epistatic feature interactions from neural network models of regulatory DNA sequences mā Peyton Greenside, Tyler C. Shimko, Polly M. Fordyce, Anshul Kundaje

    I whakaputaina 2018
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  13. 13
    Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

    Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution mā Amit Blumberg, Edward J. Rice, Anshul Kundaje, Charles G. Danko, Dan Mishmar

    I whakaputaina 2017
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  14. 14
    Linking disease associations with regulatory information in the human genome

    Linking disease associations with regulatory information in the human genome mā Marc A. Schaub, Alan P. Boyle, Anshul Kundaje, Serafim Batzoglou, M Snyder

    I whakaputaina 2012
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  15. 15
    Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays

    Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays mā Rajiv Movva, Peyton Greenside, Georgi K. Marinov, Surag Nair, Avanti Shrikumar, Anshul Kundaje

    I whakaputaina 2019
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  16. 16
    Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum

    Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum mā Georgi K. Marinov, Alexandro E. Trevino, T. Xiang, Anshul Kundaje, Arthur Grossman, William J. Greenleaf

    I whakaputaina 2021
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  17. 17
    Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

    Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease mā Elizabeta Gjoneska, Andreas Pfenning, Hansruedi Mathys, Gerald Quon, Anshul Kundaje, Li-Huei Tsai, Manolis Kellis

    I whakaputaina 2015
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  18. 18
    Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

    Domain-adaptive neural networks improve cross-species prediction of transcription factor binding mā Kelly Cochran, Divyanshi Srivastava, Avanti Shrikumar, Akshay Balsubramani, Ross C. Hardison, Anshul Kundaje, Shaun Mahony

    I whakaputaina 2022
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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  19. 19
    Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage

    Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage mā Sahin Naqvi, Seungsoo Kim, Saman Tabatabaee, Anusri Pampari, Anshul Kundaje, Jonathan K. Pritchard, Joanna Wysocka

    I whakaputaina 2025
    Whiwhi kuputuhi katoa
    Artigo
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  20. 20
    Chromatin accessibility dynamics reveal novel functional enhancers in <i>C. elegans</i>

    Chromatin accessibility dynamics reveal novel functional enhancers in <i>C. elegans</i> mā Aaron C. Daugherty, Robin W. Yeo, Jason D. Buenrostro, William J. Greenleaf, Anshul Kundaje, Anne Brunet

    I whakaputaina 2017
    Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
    Artigo
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