Risultati della ricerca - Anshul Kundaje

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  1. 1
    Reverse-complement parameter sharing improves deep learning models for genomics

    Reverse-complement parameter sharing improves deep learning models for genomics di Avanti Shrikumar, Peyton Greenside, Anshul Kundaje

    Pubblicazione 2017
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  2. 2
    GkmExplain: fast and accurate interpretation of nonlinear gapped k-mer SVMs

    GkmExplain: fast and accurate interpretation of nonlinear gapped k-mer SVMs di Avanti Shrikumar, Eva Prakash, Anshul Kundaje

    Pubblicazione 2019
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  3. 3
    Characterization of the direct targets of<scp>FOXO</scp>transcription factors throughout evolution

    Characterization of the direct targets of<scp>FOXO</scp>transcription factors throughout evolution di Ashley E. Webb, Anshul Kundaje, Anne Brunet

    Pubblicazione 2016
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  4. 4
    Denoising genome-wide histone ChIP-seq with convolutional neural networks

    Denoising genome-wide histone ChIP-seq with convolutional neural networks di Pang Wei Koh, Emma Pierson, Anshul Kundaje

    Pubblicazione 2017
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  5. 5
    The ENCODE Blacklist: Identification of Problematic Regions of the Genome

    The ENCODE Blacklist: Identification of Problematic Regions of the Genome di Haley M. Amemiya, Anshul Kundaje, Alan P. Boyle

    Pubblicazione 2019
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  6. 6
    Umap and Bismap: quantifying genome and methylome mappability

    Umap and Bismap: quantifying genome and methylome mappability di Mehran Karimzadeh, Carl Ernst, Anshul Kundaje, Michael M. Hoffman

    Pubblicazione 2018
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  7. 7
    Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts

    Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts di Surag Nair, Daniel Sunwook Kim, Jacob Perricone, Anshul Kundaje

    Pubblicazione 2019
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  8. 8
    MTSplice predicts effects of genetic variants on tissue-specific splicing

    MTSplice predicts effects of genetic variants on tissue-specific splicing di Jun Cheng, Muhammed Hasan Çelik, Anshul Kundaje, Julien Gagneur

    Pubblicazione 2021
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  9. 9
    Deciphering the impact of genetic variation on human polyadenylation using APARENT2

    Deciphering the impact of genetic variation on human polyadenylation using APARENT2 di Johannes Linder, Samantha E. Koplik, Anshul Kundaje, Georg Seelig

    Pubblicazione 2022
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  10. 10
    Large-Scale Quality Analysis of Published ChIP-seq Data

    Large-Scale Quality Analysis of Published ChIP-seq Data di Georgi K. Marinov, Anshul Kundaje, Peter J. Park, B Wold

    Pubblicazione 2013
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  11. 11
    Predicting genetic regulatory response using classification

    Predicting genetic regulatory response using classification di Manuel Middendorf, Anshul Kundaje, Chris Wiggins, Yoav Freund, Christina Leslie

    Pubblicazione 2004
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  12. 12
    Discovering epistatic feature interactions from neural network models of regulatory DNA sequences

    Discovering epistatic feature interactions from neural network models of regulatory DNA sequences di Peyton Greenside, Tyler C. Shimko, Polly M. Fordyce, Anshul Kundaje

    Pubblicazione 2018
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  13. 13
    Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

    Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution di Amit Blumberg, Edward J. Rice, Anshul Kundaje, Charles G. Danko, Dan Mishmar

    Pubblicazione 2017
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  14. 14
    Linking disease associations with regulatory information in the human genome

    Linking disease associations with regulatory information in the human genome di Marc A. Schaub, Alan P. Boyle, Anshul Kundaje, Serafim Batzoglou, M Snyder

    Pubblicazione 2012
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  15. 15
    Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays

    Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays di Rajiv Movva, Peyton Greenside, Georgi K. Marinov, Surag Nair, Avanti Shrikumar, Anshul Kundaje

    Pubblicazione 2019
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  16. 16
    Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum

    Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum di Georgi K. Marinov, Alexandro E. Trevino, T. Xiang, Anshul Kundaje, Arthur Grossman, William J. Greenleaf

    Pubblicazione 2021
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  17. 17
    Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

    Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease di Elizabeta Gjoneska, Andreas Pfenning, Hansruedi Mathys, Gerald Quon, Anshul Kundaje, Li-Huei Tsai, Manolis Kellis

    Pubblicazione 2015
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  18. 18
    Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

    Domain-adaptive neural networks improve cross-species prediction of transcription factor binding di Kelly Cochran, Divyanshi Srivastava, Avanti Shrikumar, Akshay Balsubramani, Ross C. Hardison, Anshul Kundaje, Shaun Mahony

    Pubblicazione 2022
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  19. 19
    Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage

    Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage di Sahin Naqvi, Seungsoo Kim, Saman Tabatabaee, Anusri Pampari, Anshul Kundaje, Jonathan K. Pritchard, Joanna Wysocka

    Pubblicazione 2025
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  20. 20
    Chromatin accessibility dynamics reveal novel functional enhancers in <i>C. elegans</i>

    Chromatin accessibility dynamics reveal novel functional enhancers in <i>C. elegans</i> di Aaron C. Daugherty, Robin W. Yeo, Jason D. Buenrostro, William J. Greenleaf, Anshul Kundaje, Anne Brunet

    Pubblicazione 2017
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