Search Results - Anne‐Katrin Emde

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  1. 1
    A novel and well-defined benchmarking method for second generation read mapping

    A novel and well-defined benchmarking method for second generation read mapping by Manuel Holtgrewe, Anne‐Katrin Emde, David Weese, Knut Reinert

    Published 2011
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  2. 2
    Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone

    Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone by Kathrin Trappe, Anne‐Katrin Emde, Hans‐Christian Ehrlich, Knut Reinert

    Published 2014
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  3. 3
    RazerS—fast read mapping with sensitivity control

    RazerS—fast read mapping with sensitivity control by David Weese, Anne‐Katrin Emde, Tobias Rausch, Andreas Gogol‐Döring, Knut Reinert

    Published 2009
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  4. 4
    Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS

    Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS by Anne‐Katrin Emde, Marcel H. Schulz, David Weese, Ruping Sun, Martin Vingron, Vera M. Kalscheuer, Stefan A. Haas, Knut Reinert

    Published 2012
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  5. 5
    Genome-wide somatic variant calling using localized colored de Bruijn graphs

    Genome-wide somatic variant calling using localized colored de Bruijn graphs by Giuseppe Narzisi, André Corvelo, Kanika Arora, Ewa A. Bergmann, Minita Shah, Rajeeva Musunuri, Anne‐Katrin Emde, Nicolas Robine, Vladimir Vacic, Michael C. Zody

    Published 2018
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  6. 6
    Disease variants in genomes of 44 centenarians

    Disease variants in genomes of 44 centenarians by Yun Freudenberg‐Hua, Jan Freudenberg, Vladimir Vacic, Avinash Abhyankar, Anne‐Katrin Emde, Danny Ben‐Avraham, Nir Barzilai, Dayna M. Oschwald, Erika Christen, Jeremy Koppel, Blaine Greenwald, Robert B. Darnell, Søren Germer, Gil Atzmon, Peter Davies

    Published 2014
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  7. 7
    Human papillomavirus and the landscape of secondary genetic alterations in oral cancers

    Human papillomavirus and the landscape of secondary genetic alterations in oral cancers by Maura L. Gillison, Keiko Akagi, Weihong Xiao, Bo Jiang, Robert K. L. Pickard, Jingfeng Li, Benjamin Swanson, Amit Agrawal, Mark Zucker, Birgit Stache-Crain, Anne-Katrin Emde, Heather Geiger, Nicolas Robine, Kevin R. Coombes, David E. Symer

    Published 2018
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  8. 8
    Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia

    Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia by Nicole McNeer, John Philip, Heather Geiger, Rhonda E. Ries, Vincent‐Philippe Lavallée, Michael F. Walsh, Minita Shah, Kanika Arora, Anne‐Katrin Emde, Nicolas Robine, Todd A. Alonzo, E. Anders Kolb, Alan S. Gamis, Malcolm A. Smith, Daniela S. Gerhard, Jaime Guidry-Auvil, Soheil Meshinchi, Alex Kentsis

    Published 2019
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  9. 9
    Diverse tumorigenic consequences of human papillomavirus integration in primary oropharyngeal cancers

    Diverse tumorigenic consequences of human papillomavirus integration in primary oropharyngeal cancers by David E. Symer, Keiko Akagi, Heather Geiger, Song Yang, Gaiyun Li, Anne‐Katrin Emde, Weihong Xiao, Bo Jiang, André Corvelo, Nora C. Toussaint, Jingfeng Li, Amit Agrawal, Enver Özer, Adel K. El‐Naggar, Zoe Du, Jitesh B. Shewale, Birgit Stache-Crain, Mark Zucker, Nicolas Robine, Kevin R. Coombes, Maura L. Gillison

    Published 2021
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  10. 10
    Detection of a Recurrent <i>DNAJB1-PRKACA</i> Chimeric Transcript in Fibrolamellar Hepatocellular Carcinoma

    Detection of a Recurrent <i>DNAJB1-PRKACA</i> Chimeric Transcript in Fibrolamellar Hepatocellular Carcinoma by Joshua N. Honeyman, Elana P. Simon, Nicolas Robine, Rachel Chiaroni-Clarke, David G. Darcy, Irene Isabel P. Lim, Caroline E. Gleason, Jennifer M. Murphy, Brad R. Rosenberg, Lydia Teegan, Constantin N. Takacs, Sergio Botero, R.L. Belote, Søren Germer, Anne‐Katrin Emde, Vladimir Vacic, Umesh Bhanot, Michael P. LaQuaglia, Sanford M. Simon

    Published 2014
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  11. 11
    Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions

    Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions by A. Rose Brannon, Efsevia Vakiani, Brooke E. Sylvester, Sasinya N. Scott, Gregory McDermott, Ronak Shah, Krishan Kania, Agnès Viale, Dayna M. Oschwald, Vladimir Vacic, Anne‐Katrin Emde, Andrea Cercek, Rona Yaeger, Nancy E. Kemeny, Leonard B. Saltz, Jinru Shia, Michael I. D’Angelica, Martin R. Weiser, David B. Solit, Michael F. Berger

    Published 2014
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  12. 12
    Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression

    Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression by Thomas G. Paulson, Patricia C. Galipeau, Kenji Oman, Carissa A. Sanchez, Mary K. Kuhner, Lucian P. Smith, Kevin Hadi, Minita Shah, Kanika Arora, Jennifer M. G. Shelton, Molly Johnson, André Corvelo, Carlo C. Maley, Xiaotong Yao, Rashesh Sanghvi, Elisa Venturini, Anne‐Katrin Emde, Benjamin Hubert, Marcin Imieliński, Nicolas Robine, Brian J. Reid, Xiaohong Li

    Published 2022
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  13. 13
    The gout epidemic in French Polynesia: a modelling study of data from the Ma’i u’u epidemiological survey

    The gout epidemic in French Polynesia: a modelling study of data from the Ma’i u’u epidemiological survey by Tristan Pascart, Kaja A. Wasik, Cristian Preda, Valérie Chune, Jérémie Torterat, Nicolas Prud’homme, Maryline Nassih, Agathe Martin, Julien Le Masson, Vahinetua Rodière, Sylvain Frogier, Georges Canova, Jean-Paul Pescheux, Charles Shan Sei Fan, Charlotte Jauffret, Patrick Claeys, Sarah LeBaron von Baeyer, Stephane E. Castel, Anne‐Katrin Emde, Laura M. Yerges-Armstrong, Keolu Fox, Megan Leask, Jean‐Jacques Vitagliano, Sahara Graf, Laurène Norberciak, Jacques Raynal, Nicola Dalbeth, Tony R. Merriman, Thomas Bardin, Erwan Oehler

    Published 2024
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  14. 14
    PGBD5 promotes site-specific oncogenic mutations in human tumors

    PGBD5 promotes site-specific oncogenic mutations in human tumors by Anton G. Henssen, Richard P. Koche, Jiali Zhuang, Eileen Jiang, Casie Reed, Amy Eisenberg, Eric Still, Ian C. MacArthur, Elias Rodríguez-Fos, Santiago González, Montserrat Puiggròs, Andrew N. Blackford, Christopher E. Mason, Elisa de Stanchina, Mithat Gönen, Anne-Katrin Emde, Minita Shah, Kanika Arora, Catherine Reeves, Nicholas D. Socci, Elizabeth J. Perlman, Cristina R. Antonescu, Charles W.M. Roberts, Hanno Steen, Elizabeth A. Mullen, Stephen P. Jackson, David Torrents, Zhiping Weng, Scott A. Armstrong, Alex Kentsis

    Published 2017
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  15. 15
    Next-Generation Rapid Autopsies Enable Tumor Evolution Tracking and Generation of Preclinical Models

    Next-Generation Rapid Autopsies Enable Tumor Evolution Tracking and Generation of Preclinical Models by David J. Pisapia, Steven Salvatore, Chantal Pauli, Erika Hissong, Kenneth Wha Eng, Davide Prandi, Verena-Wilbeth Sailer, Brian D. Robinson, Kyung Park, Joanna Cyrta, Scott T. Tagawa, Myriam Kossaï, Jacqueline Fontugne, Robert Kim, Alexandros Sigaras, Rema Rao, Danielle Pancirer, Bishoy M. Faltas, Rohan Bareja, Ana M. Molina, David M. Nanus, Prajwal Rajappa, Mark M. Souweidane, Jeffrey P. Greenfield, Anne-Katrin Emde, Nicolas Robine, Olivier Elemento, Andrea Sboner, Francesca Demichelis, Himisha Beltran, Mark A. Rubin, Juan Miguel Mosquera

    Published 2017
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  16. 16
    Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response

    Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response by Himisha Beltran, Kenneth Eng, Juan Miguel Mosquera, Alexandros Sigaras, Alessandro Romanel, Hanna Rennert, Myriam Kossaï, Chantal Pauli, Bishoy M. Faltas, Jacqueline Fontugne, Kyung Park, Jason R. Banfelder, Davide Prandi, Neel S. Madhukar, Tuo Zhang, Jessica Padilla, Noah Greco, Terra J. McNary, Erick Herrscher, David Wilkes, Theresa Y. MacDonald, Hui Xue, Vladimir Vacic, Anne-Katrin Emde, Dayna M. Oschwald, Adrian Y. Tan, Zhengming Chen, Colin C. Collins, Martin Gleave, Yuzhuo Wang, Dimple Chakravarty, Marc Schiffman, Robert Kim, Fabien Campagne, Brian D. Robinson, David M. Nanus, Scott T. Tagawa, Jenny Xiang, Agata Smogorzewska, Francesca Demichelis, David S. Rickman, Andrea Sboner, Olivier Elemento, Mark A. Rubin

    Published 2015
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  17. 17
    Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs

    Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs by Kevin Hadi, Xiaotong Yao, Julie M. Behr, Aditya Deshpande, Charalampos Xanthopoulakis, Huasong Tian, Sarah Kudman, Joel Rosiene, Madison Darmofal, Joseph DeRose, Rick Mortensen, Emily M. Adney, Alon Shaiber, Zoran Gajic, Michael Sigouros, Kenneth Eng, Jeremiah A. Wala, Kazimierz O. Wrzeszczyński, Kanika Arora, Minita Shah, Anne-Katrin Emde, Vanessa Felice, Mayu O. Frank, Robert B. Darnell, Mahmoud Ghandi, Franklin W. Huang, Sally M. Dewhurst, John Maciejowski, Titia de Lange, Jeremy Setton, Nadeem Riaz, Jorge S. Reis‐Filho, Simon N. Powell, David A. Knowles, Ed Reznik, Bud Mishra, Rameen Beroukhim, Michael C. Zody, Nicolas Robine, Kenji Oman, Carissa A. Sanchez, Mary K. Kuhner, Lucian P. Smith, Patricia C. Galipeau, Thomas G. Paulson, Brian J. Reid, Xiaohong Li, David Wilkes, Andrea Sboner, Juan Miguel Mosquera, Olivier Elemento, Marcin Imieliński

    Published 2020
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  18. 18
    Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program

    Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program by Daniel Taliun, Daniel Harris, Michael D. Kessler, Jedidiah Carlson, Zachary A. Szpiech, Raúl Torres, Sarah A. Gagliano Taliun, André Corvelo, Stephanie M. Gogarten, Hyun Min Kang, Achilleas Pitsillides, Jonathon LeFaive, Seung‐been Lee, Xiaowen Tian, Brian L. Browning, Sayantan Das, Anne‐Katrin Emde, Wayne E. Clarke, Douglas P. Loesch, Amol C. Shetty, Thomas W. Blackwell, Albert V. Smith, Quenna Wong, Xiaoming Liu, Matthew P. Conomos, Dean Bobo, François Aguet, Christine M. Albert, Álvaro Alonso, Kristin Ardlie, Dan E. Arking, Stella Aslibekyan, Paul L. Auer, John Barnard, R. Graham Barr, Lucas Barwick, Lewis C. Becker, Rebecca Beer, Emelia J. Benjamin, Lawrence F. Bielak, John Blangero, Michael Boehnke, Donald W. Bowden, Jennifer A. Brody, Esteban G. Burchard, Brian E. Cade, James F. Casella, Brandon Chalazan, Daniel I. Chasman, Yii‐Der Ida Chen, Michael H. Cho, Seung Hoan Choi, Mina K. Chung, Clary B. Clish, Adolfo Correa, Joanne E. Curran, Brian Custer, Dawood Darbar, Michelle Daya, Mariza de Andrade, Dawn L. DeMeo, Susan K. Dutcher, Patrick T. Ellinor, Leslie Emery, Celeste Eng, Diane Fatkin, Tasha E. Fingerlin, Lukas Forer, Myriam Fornage, Nora Franceschini, Christian Fuchsberger, Stephanie M. Fullerton, Søren Germer, Mark T. Gladwin, Daniel J. Gottlieb, Xiuqing Guo, Michael E. Hall, Jiang He, Nancy L. Heard‐Costa, Susan R. Heckbert, Marguerite R. Irvin, Jill M. Johnsen, Andrew D. Johnson, Robert C. Kaplan, Sharon L. R. Kardia, Tanika N. Kelly, Shannon Kelly, Eimear E. Kenny, Douglas P. Kiel, Robert Klemmer, Barbara A. Konkle, Charles Kooperberg, Anna Köttgen, Leslie A. Lange, Jessica Lasky‐Su, Daniel Levy, Xihong Lin, Keng‐Han Lin, Chunyu Liu, Ruth J. F. Loos

    Published 2021
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  19. 19
    Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program

    Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program by Daniel Taliun, Daniel Harris, Michael D. Kessler, Jedidiah Carlson, Zachary A. Szpiech, Raúl Torres, Sarah A. Gagliano Taliun, André Corvelo, Stephanie M. Gogarten, Hyun Min Kang, Achilleas Pitsillides, Jonathon LeFaive, Seung‐been Lee, Xiaowen Tian, Brian L. Browning, Sayantan Das, Anne‐Katrin Emde, Wayne E. Clarke, Douglas P. Loesch, Amol C. Shetty, Thomas W. Blackwell, Quenna Wong, François Aguet, Christine M. Albert, Álvaro Alonso, Kristin Ardlie, Stella Aslibekyan, Paul L. Auer, John Barnard, R. Graham Barr, Lewis C. Becker, Rebecca Beer, Emelia J. Benjamin, Lawrence F. Bielak, John Blangero, Michael Boehnke, Donald W. Bowden, Jennifer A. Brody, Esteban G. Burchard, Brian E. Cade, James F. Casella, Brandon Chalazan, Yii‐Der Ida Chen, Michael H. Cho, Seung Hoan Choi, Mina K. Chung, Clary B. Clish, Adolfo Correa, Joanne E. Curran, Brian Custer, Dawood Darbar, Michelle Daya, Mariza de Andrade, Dawn L. DeMeo, Susan K. Dutcher, Patrick T. Ellinor, Leslie Emery, Diane Fatkin, Lukas Forer, Myriam Fornage, Nora Franceschini, Christian Fuchsberger, Stephanie M. Fullerton, Søren Germer, Mark T. Gladwin, Daniel J. Gottlieb, Xiuqing Guo, Michael E. Hall, Jiang He, Nancy L. Heard‐Costa, Susan R. Heckbert, Marguerite R. Irvin, Jill M. Johnsen, Andrew D. Johnson, Sharon L. R. Kardia, Tanika N. Kelly, Shannon Kelly, Eimear E. Kenny, Douglas P. Kiel, Robert Klemmer, Barbara A. Konkle, Charles Kooperberg, Anna Köttgen, Leslie A. Lange, Jessica Lasky‐Su, Daniel Levy, Xihong Lin, Keng‐Han Lin, Chunyu Liu, Ruth J. F. Loos, Lori Garman, Robert E. Gerszten, Steven A. Lubitz, Kathryn L. Lunetta, Angel C. Y. Mak, Ani Manichaikul, Alisa K. Manning, Rasika A. Mathias, David D. McManus, Stephen T. McGarvey

    Published 2019
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