Rezultati - Andrey Sivachenko

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  1. 1
    Massively Parallel Sequencing of Human Urinary Exosome/Microvesicle RNA Reveals a Predominance of Non-Coding RNA

    Massively Parallel Sequencing of Human Urinary Exosome/Microvesicle RNA Reveals a Predominance of Non-Coding RNA od Kevin C. Miranda, Daniel T. Bond, Joshua Z. Levin, Xian Adiconis, Andrey Sivachenko, Carsten Russ, Dennis Brown, Chad Nusbaum, Leileata M. Russo

    Izdano 2014
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  2. 2
    Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

    Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples od Kristian Cibulskis, Michael S. Lawrence, Scott L. Carter, Andrey Sivachenko, David M. Jaffe, Carrie Sougnez, Stacey Gabriel, Matthew Meyerson, Eric S. Lander, Gad Getz

    Izdano 2013
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  3. 3
    RNA-SeQC: RNA-seq metrics for quality control and process optimization

    RNA-SeQC: RNA-seq metrics for quality control and process optimization od David S. DeLuca, Joshua Z. Levin, Andrey Sivachenko, Timothy R. Fennell, Marc-Danie Nazaire, Chris Williams, Michael Reich, Wendy Winckler, Gad Getz

    Izdano 2012
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  4. 4
    PRADA: pipeline for RNA sequencing data analysis

    PRADA: pipeline for RNA sequencing data analysis od Wandaliz Torres‐García, Siyuan Zheng, Andrey Sivachenko, Rahulsimham Vegesna, Qianghu Wang, Rong Yao, Michael F. Berger, John N. Weinstein, Gad Getz, Roel G.W. Verhaak

    Izdano 2014
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  5. 5
    Genome-scale DNA methylation maps of pluripotent and differentiated cells

    Genome-scale DNA methylation maps of pluripotent and differentiated cells od Alexander Meissner, Tarjei S. Mikkelsen, Hongcang Gu, Marius Wernig, Jacob H. Hanna, Andrey Sivachenko, Xiaolan Zhang, B Bernstein, Chad Nusbaum, David B. Jaffe, Andreas Gnirke, Rudolf Jaenisch, Eric S. Lander

    Izdano 2008
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  6. 6
    Isogenic cell models of cystic fibrosis-causing variants in natively expressing pulmonary epithelial cells

    Isogenic cell models of cystic fibrosis-causing variants in natively expressing pulmonary epithelial cells od H. Valley, K. Bukis, Alisa Bell, Yi Cheng, Eric C. Wong, Nikole J. Jordan, Norm Allaire, Andrey Sivachenko, Feng Liang, Hermann Bihler, Philip Thomas, Jérôme Mahiou, Martin Mense

    Izdano 2018
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  7. 7
    A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in U2AF1 Reveals Commonly Altered Splicing Events

    A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in U2AF1 Reveals Commonly Altered Splicing Events od Angela N. Brooks, Peter S. Choi, Luc de Waal, Tanaz Sharifnia, Marcin Imieliński, Gordon Saksena, Chandra Sekhar Pedamallu, Andrey Sivachenko, Mara Rosenberg, Juliann Chmielecki, Michael S. Lawrence, David S. DeLuca, Gad Getz, Matthew Meyerson

    Izdano 2014
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  8. 8
    Comparative analysis of RNA sequencing methods for degraded or low-input samples

    Comparative analysis of RNA sequencing methods for degraded or low-input samples od Xian Adiconis, Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele Busby, Aaron M. Berlin, Andrey Sivachenko, Dawn Thompson, Alec Wysoker, Timothy R. Fennell, Andreas Gnirke, Nathalie Pochet, Aviv Regev, Joshua Z. Levin

    Izdano 2013
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  9. 9
    Inhibitor-Sensitive FGFR2 and FGFR3 Mutations in Lung Squamous Cell Carcinoma

    Inhibitor-Sensitive FGFR2 and FGFR3 Mutations in Lung Squamous Cell Carcinoma od Rachel G. Liao, Joonil Jung, Jeremy H. Tchaicha, Matthew D. Wilkerson, Andrey Sivachenko, Ellen M. Beauchamp, Qingsong Liu, Trevor J. Pugh, Chandra Sekhar Pedamallu, D. Neil Hayes, Nathanael S. Gray, Gad Getz, Kwok‐Kin Wong, Robert I. Haddad, Matthew Meyerson, Peter S. Hammerman

    Izdano 2013
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  10. 10
    A framework for variation discovery and genotyping using next-generation DNA sequencing data

    A framework for variation discovery and genotyping using next-generation DNA sequencing data od Mark A. DePristo, Eric Banks, Ryan Poplin, Kiran Garimella, Jared Maguire, Christopher Hartl, Anthony Philippakis, Guillermo del Angel, Manuel A. Rivas, Matt Hanna, Aaron McKenna, Tim Fennell, Andrew Kernytsky, Andrey Sivachenko, Kristian Cibulskis, Stacey Gabriel, David Altshuler, Mark J. Daly

    Izdano 2011
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  11. 11
    In vitro modulator responsiveness of 655 CFTR variants found in people with cystic fibrosis

    In vitro modulator responsiveness of 655 CFTR variants found in people with cystic fibrosis od Hermann Bihler, Andrey Sivachenko, Linda Millen, Priyanka Bhatt, Amita Thakerar Patel, Justin Chin, Violaine Bailey, Isaac Musisi, André LaPan, Norm Allaire, J Conté, Noah Simon, Amalia Magaret, Karen S. Raraigh, Garry R. Cutting, William R. Skach, Robert J. Bridges, Philip Thomas, Martin Mense

    Izdano 2024
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  12. 12
    Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia

    Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia od Dan A. Landau, Scott L. Carter, Petar Stojanov, Aaron McKenna, Kristen E. Stevenson, Michael S. Lawrence, Carrie Sougnez, Chip Stewart, Andrey Sivachenko, Lili Wang, Youzhong Wan, Wandi Zhang, Sachet A. Shukla, Alexander R. Vartanov, Stacey M. Fernandes, Gordon Saksena, Kristian Cibulskis, Bethany Tesar, Stacey Gabriel, Nir Hacohen, Matthew Meyerson, Eric S. Lander, Donna Neuberg, Jennifer R. Brown, Gad Getz, Catherine J. Wu

    Izdano 2013
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  13. 13
    Integrative analysis of the melanoma transcriptome

    Integrative analysis of the melanoma transcriptome od Michael F. Berger, Joshua Z. Levin, Krishna G. Vijayendran, Andrey Sivachenko, Xian Adiconis, Jared Maguire, Laura A. Johnson, James Robinson, Roel G.W. Verhaak, Carrie Sougnez, Robert C. Onofrio, Liuda Ziaugra, Kristian Cibulskis, Elisabeth Laine, Jordi Barretina, Wendy Winckler, David E. Fisher, Gad Getz, Matthew Meyerson, David B. Jaffe, Stacey Gabriel, Eric S. Lander, Reinhard Dummer, Andreas Gnirke, Chad Nusbaum, Levi A. Garraway

    Izdano 2010
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  14. 14
    <i>SF3B1</i>and Other Novel Cancer Genes in Chronic Lymphocytic Leukemia

    <i>SF3B1</i>and Other Novel Cancer Genes in Chronic Lymphocytic Leukemia od Lili Wang, Michael S. Lawrence, Youzhong Wan, Petar Stojanov, Carrie Sougnez, Kristen Stevenson, Lillian Werner, Andrey Sivachenko, David S. DeLuca, Li Zhang, Wandi Zhang, Alexander R. Vartanov, Stacey M. Fernandes, Natalie R. Goldstein, Eric G. Folco, Kristian Cibulskis, Bethany Tesar, Quinlan Sievers, Erica Shefler, Stacey Gabriel, Nir Hacohen, Robin Reed, Matthew Meyerson, Todd R. Golub, Eric S. Lander, Donna Neuberg, Jennifer R. Brown, Gad Getz, Catherine J. Wu

    Izdano 2011
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  15. 15
    The Genomic Landscape of Pediatric Ewing Sarcoma

    The Genomic Landscape of Pediatric Ewing Sarcoma od Brian D. Crompton, Chip Stewart, Amaro Taylor‐Weiner, Gabriela Alexe, Kyle C. Kurek, Monica L. Calicchio, Adam Kieżun, Scott L. Carter, Sachet A. Shukla, Swapnil Mehta, Aaron R. Thorner, Carmen de Torres, Cinzia Lavarino, Mariona Suñol, Aaron McKenna, Andrey Sivachenko, Kristian Cibulskis, Michael S. Lawrence, Petar Stojanov, Mara Rosenberg, Lauren Ambrogio, Daniel Auclair, Sara Seepo, Brendan Blumenstiel, Matthew DeFelice, Iván Imaz-Rosshandler, Angela Schwarz‐Cruz y Celis, Miguel N. Rivera, Carlos Rodríguez‐Galindo, Mark D. Fleming, Todd R. Golub, Gad Getz, Jaume Mora, Kimberly Stegmaier

    Izdano 2014
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  16. 16
    Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

    Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion od Adam J. Bass, Michael S. Lawrence, Lear E. Brace, Alex H. Ramos, Yotam Drier, Kristian Cibulskis, Carrie Sougnez, Douglas Voet, Gordon Saksena, Andrey Sivachenko, Rui Jing, Melissa Parkin, Trevor J. Pugh, Roel G.W. Verhaak, Nicolas Stransky, Adam T. Boutin, Jordi Barretina, David B. Solit, Evi Vakiani, Wenlin Shao, Yuji Mishina, Markus Warmuth, José Jiménez, Derek Y. Chiang, Sabina Signoretti, William G. Kaelin, Nicole A. Spardy, William C. Hahn, Yujin Hoshida, Shuji Ogino, Ronald A. DePinho, Lynda Chin, Levi A. Garraway, Charles S. Fuchs, José Baselga, Josep Tabernero, Stacey B. Gabriel, Eric S. Lander, Gad Getz, Matthew Meyerson

    Izdano 2011
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  17. 17
    Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine

    Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine od Eliezer M. Van Allen, Nikhil Wagle, Petar Stojanov, Danielle Perrin, Kristian Cibulskis, Sara Marlow, Judit Jané‐Valbuena, Dennis C. Friedrich, Gregory V. Kryukov, Scott L. Carter, Aaron McKenna, Andrey Sivachenko, Mara Rosenberg, Adam Kieżun, Douglas Voet, Michael S. Lawrence, Lee Lichtenstein, Jeff Gentry, Franklin W. Huang, Jennifer Fostel, Deborah Farlow, David A. Barbie, Leena Gandhi, Eric S. Lander, Stacy W. Gray, Steven Joffe, Pasi A. Jänne, Judy E. Garber, Laura E. MacConaill, Neal I. Lindeman, Barrett J. Rollins, Philip W. Kantoff, Sheila Fisher, Stacey Gabriel, Gad Getz, Levi A. Garraway

    Izdano 2014
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  18. 18
    Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity

    Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity od Austin Dulak, Petar Stojanov, Shouyong Peng, Michael S. Lawrence, Cameron Fox, Chip Stewart, Santhoshi Bandla, Yu Imamura, Steven E. Schumacher, Erica Shefler, Aaron McKenna, Scott L. Carter, Kristian Cibulskis, Andrey Sivachenko, Gordon Saksena, Douglas Voet, Alex H. Ramos, Daniel Auclair, Kristin Thompson, Carrie Sougnez, Robert C. Onofrio, Candace Guiducci, Rameen Beroukhim, Zhongren Zhou, Lin Lin, Jules Lin, Rishindra M. Reddy, Andrew C. Chang, Rodney Landrenau, Arjun Pennathur, Shuji Ogino, James D. Luketich, Todd R. Golub, Stacey Gabriel, Eric S. Lander, David G. Beer, Tony E. Godfrey, Gad Getz, Adam J. Bass

    Izdano 2013
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  19. 19
    Integrative and Comparative Genomic Analysis of Lung Squamous Cell Carcinomas in East Asian Patients

    Integrative and Comparative Genomic Analysis of Lung Squamous Cell Carcinomas in East Asian Patients od Young-Wook Kim, Peter S. Hammerman, Jaegil Kim, Ji-ae Yoon, Yoomi Lee, Jong‐Mu Sun, Matthew D. Wilkerson, Chandra Sekhar Pedamallu, Kristian Cibulskis, Yeong Kyung Yoo, Michael S. Lawrence, Petar Stojanov, Scott L. Carter, Aaron McKenna, Chip Stewart, Andrey Sivachenko, In‐Jae Oh, Hong Kwan Kim, Yong Soo Choi, Kwhanmien Kim, Young Mog Shim, Kyu-Sik Kim, Sang-Yun Song, Kook-Joo Na, Yoon‐La Choi, D. Neil Hayes, Young Tae Kim, Sukki Cho, Young‐Chul Kim, Jin Seok Ahn, Myung‐Ju Ahn, Gad Getz, Matthew Meyerson, Keunchil Park

    Izdano 2013
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  20. 20
    The genomic complexity of primary human prostate cancer

    The genomic complexity of primary human prostate cancer od Michael F. Berger, Michael S. Lawrence, Francesca Demichelis, Yotam Drier, Kristian Cibulskis, Andrey Sivachenko, Andrea Sboner, Raquel Esgueva, Dorothee Pflueger, Carrie Sougnez, Robert C. Onofrio, Scott L. Carter, Kyung Park, Lukas Habegger, Lauren Ambrogio, Timothy R. Fennell, Melissa Parkin, Gordon Saksena, Douglas Voet, Alex H. Ramos, Trevor J. Pugh, Jane Wilkinson, Sheila Fisher, Wendy Winckler, Scott Mahan, Kristin Ardlie, Jennifer Baldwin, Jonathan W. Simons, Naoki Kitabayashi, Theresa Y. MacDonald, Philip W. Kantoff, Lynda Chin, Stacey Gabriel, Mark Gerstein, Todd R. Golub, Matthew Meyerson, Ashutosh Tewari, Eric S. Lander, Gad Getz, Mark A. Rubin, Levi A. Garraway

    Izdano 2011
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