Výsledky vyhledávání - Andrey D. Prjibelski

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  1. 1
    rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

    rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data Autor Elena Bushmanova, Dmitry Antipov, Alla Lapidus, Andrey D. Prjibelski

    Vydáno 2019
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  2. 2
    Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

    Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns Autor Alla Mikheenko, Andrey D. Prjibelski, Anoushka Joglekar, Hagen Tilgner

    Vydáno 2022
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  3. 3
    Icarus: visualizer for <i>de novo</i> assembly evaluation

    Icarus: visualizer for <i>de novo</i> assembly evaluation Autor Alla Mikheenko, Gleb Valin, Andrey D. Prjibelski, Vladislav Saveliev, Alexey Gurevich

    Vydáno 2016
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  4. 4
    Versatile genome assembly evaluation with QUAST-LG

    Versatile genome assembly evaluation with QUAST-LG Autor Alla Mikheenko, Andrey D. Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey Gurevich

    Vydáno 2018
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  5. 5
    Assembling short reads from jumping libraries with large insert sizes

    Assembling short reads from jumping libraries with large insert sizes Autor Irina Vasilinetc, Andrey D. Prjibelski, Alexey Gurevich, Anton Korobeynikov, Pavel A. Pevzner

    Vydáno 2015
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  6. 6
    rnaQUAST: a quality assessment tool for <i>de novo</i> transcriptome assemblies

    rnaQUAST: a quality assessment tool for <i>de novo</i> transcriptome assemblies Autor Elena Bushmanova, Dmitry Antipov, Alla Lapidus, В. Д. Суворов, Andrey D. Prjibelski

    Vydáno 2016
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  7. 7
    ExSPAnder: a universal repeat resolver for DNA fragment assembly

    ExSPAnder: a universal repeat resolver for DNA fragment assembly Autor Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son Pham, Anton Korobeynikov, Alla Lapidus, Pavel A. Pevzner

    Vydáno 2014
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  8. 8
    De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments

    De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments Autor Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, Andrey D. Prjibelski, Mark Fisher, Fernando Vargas, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner

    Vydáno 2019
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  9. 9
    SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Autor Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

    Vydáno 2012
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  10. 10
    A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types.

    A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types. Autor Careen Foord, Andrey D. Prjibelski, Wen Hu, Lieke Michielsen, Andrea Vandelli, Oleksandr Narykov, Brian Evans, Justine Hsu, Natan Belchikov, Julien Jarroux, Yi He, M. Elizabeth Ross, Iman Hajirasouliha, Gian Gaetano Tartaglia, Dmitry Korkin, Alexandru I. Tomescu, Hagen Tilgner

    Vydáno 2025
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  11. 11
    Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish

    Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish Autor Konstantin A. Demin, Anton M. Lakstygal, Nataliya A. Krotova, Alexey Masharsky, Natsuki Tagawa, Maria V. Chernysh, Nikita P. Ilyin, Alexander S. Taranov, David S. Galstyan, Ksenia A. Derzhavina, Nataliia A. Levchenko, Tatiana O. Kolesnikova, Mikael S. Mor, M. L. Vasyutina, Evgeniya V. Efimova, Nataliia V. Katolikova, Andrey D. Prjibelski, Raul R. Gainetdinov, Murilo S. de Abreu, Tamara G. Amstislavskaya, Tatyana Strekalova, Allan V. Kalueff

    Vydáno 2020
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  12. 12
    A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

    A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain Autor Anoushka Joglekar, Andrey D. Prjibelski, Ahmed Mahfouz, Paul Collier, Susan Lin, Anna Katharina Schlusche, Jordan Marrocco, Stephen R. Williams, Bettina Haase, Ashley Hayes, Jennifer Chew, Neil Weisenfeld, Man Ying Wong, Alexander N. Stein, Simon A. Hardwick, Toby Hunt, Qi Wang, Christoph Dieterich, Zachary Bent, Olivier Fédrigo, Steven A. Sloan, Davide Risso, Erich D. Jarvis, Paul Flicek, Wenjie Luo, Geoffrey S. Pitt, Adam Frankish, August B. Smit, M. Elizabeth Ross, Hagen Tilgner

    Vydáno 2021
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  13. 13
    Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue

    Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue Autor Simon A. Hardwick, Wen Hu, Anoushka Joglekar, Li Fan, Paul Collier, Careen Foord, Jennifer Balacco, Samantha N. Lanjewar, Maureen M. Sampson, Frank Koopmans, Andrey D. Prjibelski, Alla Mikheenko, Natan Belchikov, Julien Jarroux, Anne Bergstrom Lucas, Miklós Palkovits, Wenjie Luo, Teresa A. Milner, Lishomwa C. Ndhlovu, August B. Smit, John Q. Trojanowski, Virginia M.‐Y. Lee, Olivier Fédrigo, Steven A. Sloan, Dóra Tombácz, M. Elizabeth Ross, Erich D. Jarvis, Zsolt Boldogkői, Li Gan, Hagen Tilgner

    Vydáno 2022
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  14. 14
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Autor Francisco J. Pardo-Palacios, Fairlie Reese, Sílvia Carbonell Sala, Mark Diekhans, Cindy Liang, Dingjie Wang, Brian A. Williams, Matthew S. Adams, Amit K. Behera, Julien Lagarde, Haoran Li, Andrey D. Prjibelski, Gabriela Balderrama-Gutierrez, Muhammed Hasan Çelik, Maite De María, Nancy D. Denslow, Natàlia García‐Reyero, Stefan Goetz, Margaret E. Hunter, Jane Loveland, Carlos Menor, David Moraga, Jonathan M. Mudge, Hazuki Takahashi, Alison D. Tang, Ingrid Youngworth, Piero Carninci, Roderic Guigó, Hagen Tilgner, B Wold, Christopher Vollmers, Gloria Sheynkman, Adam Frankish, Kin Fai Au, Ana Conesa, A Mortazavi, Angela N. Brooks

    Vydáno 2021
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  15. 15
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Autor Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrández-Peral, Natàlia García‐Reyero, Stefan Goetz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks

    Vydáno 2023
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  16. 16
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Autor Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley M. Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Alyssa Cousineau, Namrita Dhillon, José M. Fernández, Luis Ferrández-Peral, Natàlia Garcia-Reyero, Stefan Götz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Xingjie Ren, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, René Maehr, Yin Shen, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks

    Vydáno 2024
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