检索结果 - Andrew Carroll
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Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads 由 Kishwar Shafin, Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel, Gunjan Baid, Mikhail Kolmogorov, Jordan M. Eizenga, Karen H. Miga, P. Carnevali, Miten Jain, Andrew Carroll, Benedict Paten
出版 2021Artigo -
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Accurate human genome analysis with Element Avidity sequencing 由 Andrew Carroll, Alexey Kolesnikov, Daniel E. Cook, Lucas Brambrink, Kelly Wiseman, Sophie Billings, Semyon Kruglyak, Bryan R. Lajoie, June Zhao, Shawn Levy, Cory Y. McLean, Kishwar Shafin, Maria Nattestad, Pi-Chuan Chang
出版 2023Pré-impressão -
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Local read haplotagging enables accurate long-read small variant calling 由 Alexey Kolesnikov, Daniel E. Cook, Maria Nattestad, Lucas Brambrink, Brandy McNulty, John E. Gorzynski, Sneha D. Goenka, Euan A. Ashley, Miten Jain, Karen H. Miga, Benedict Paten, Pi-Chuan Chang, Andrew Carroll, Kishwar Shafin
出版 2024Artigo -
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Label-free in situ imaging of lignification in the cell wall of low lignin transgenic Populus trichocarpa 由 Martin Schmidt, Adam Schwartzberg, Pradeep N. Perera, Alexander Weber‐Bargioni, Andrew Carroll, Purnamrita Sarkar, Elena Bosneaga, Jeffrey J. Urban, Jina Song, Mikhail Balakshin, Ewellyn A. Capanema, Manfred Auer, Paul D. Adams, Vincent L. Chiang, P. James Schuck
出版 2009Artigo -
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Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline 由 Jeffrey G. Reid, Andrew Carroll, Narayanan Veeraraghavan, Mahmoud Dahdouli, Andreas Sundquist, Adam C. English, Matthew N. Bainbridge, Simon White, William Salerno, Christian Buhay, Fuli Yu, Donna M. Muzny, Richard Daly, Geoff M. Duyk, Richard A. Gibbs, Eric Boerwinkle
出版 2014Artigo -
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Large-scale machine-learning-based phenotyping significantly improves genomic discovery for optic nerve head morphology 由 Babak Alipanahi, Farhad Hormozdiari, Babak Behsaz, Justin Cosentino, Zachary R. McCaw, Emanuel Schorsch, D. Sculley, Elizabeth H. Dorfman, Paul J. Foster, Lily H. Peng, Sonia Phene, Naama Hammel, Andrew Carroll, Anthony P. Khawaja, Cory Y. McLean
出版 2021Artigo -
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Unsupervised representation learning on high-dimensional clinical data improves genomic discovery and prediction 由 Taedong Yun, Justin Cosentino, Babak Behsaz, Zachary R. McCaw, Davin Hill, Robert Luben, Dongbing Lai, John Bates, Howard H. Yang, Tae‐Hwi Schwantes‐An, Yuchen Zhou, Anthony P. Khawaja, Andrew Carroll, Brian D. Hobbs, Michael H. Cho, Cory Y. McLean, Farhad Hormozdiari
出版 2024Artigo -
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Pangenomics enables genotyping of known structural variants in 5202 diverse genomes 由 Jouni Sirén, Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello, Jonas A. Sibbesen, Glenn Hickey, Pi-Chuan Chang, Andrew Carroll, Namrata Gupta, Stacey Gabriel, Thomas W. Blackwell, Aakrosh Ratan, Kent D. Taylor, Stephen S. Rich, Jerome I. Rotter, David Haussler, Erik Garrison, Benedict Paten
出版 2021Artigo -
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Chromosome-scale, haplotype-resolved assembly of human genomes 由 Shilpa Garg, Arkarachai Fungtammasan, Andrew Carroll, Mike Chou, Anthony D. Schmitt, Xiang Zhou, Stephen Mac, Paul Peluso, Emily Hatas, Jay Ghurye, Jared Maguire, Medhat Mahmoud, Haoyu Cheng, David N. Heller, Justin M. Zook, Tobias Moemke, Tobias Marschall, Fritz J. Sedlazeck, John Aach, Chen-Shan Chin, George M. Church, Heng Li
出版 2020Artigo -
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A diploid assembly-based benchmark for variants in the major histocompatibility complex 由 Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate, Michael C. Schatz, Chunlin Xiao, William J. Rowell, Charles Markello, Jesse Farek, Fritz J. Sedlazeck, Vikas Bansal, Byunggil Yoo, Neil Miller, Xin Zhou, Andrew Carroll, Álvaro Martínez Barrio, Marc Salit, Tobias Marschall, Alexander Dilthey, Justin M. Zook
出版 2020Artigo -
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Assessing structural variation in a personal genome—towards a human reference diploid genome 由 Adam C. English, William Salerno, Oliver Hampton, Claudia Gonzaga‐Jauregui, Shruthi Ambreth, Deborah Ritter, Christine R. Beck, Caleb Davis, Mahmoud Dahdouli, Singer Ma, Andrew Carroll, Narayanan Veeraraghavan, Jeremy Bruestle, Becky Drees, Alex Hastie, Ernest T. Lam, Simon White, Pamela Mishra, Min Wang, Yi Han, Feng Zhang, Paweł Stankiewicz, David A. Wheeler, Jeffrey G. Reid, Donna M. Muzny, Jeffrey Rogers, Aniko Sabo, Kim C. Worley, James R. Lupski, Eric Boerwinkle, Richard A. Gibbs
出版 2015Artigo -
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Highly-accurate long-read sequencing improves variant detection and assembly of a human genome 由 Aaron M. Wenger, Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard Hall, Gregory T. Concepcion, Jana Ebler, Arkarachai Fungtammasan, Alexey Kolesnikov, Nathan D. Olson, Armin Töpfer, Michael Alonge, Medhat Mahmoud, Y. Qian, Chen-Shan Chin, Adam M. Phillippy, Michael C. Schatz, Gene Myers, Mark A. DePristo, Jue Ruan, Tobias Marschall, Fritz J. Sedlazeck, Justin M. Zook, Heng Li, Sergey Koren, Andrew Carroll, David R. Rank, Michael W. Hunkapiller
出版 2019Pré-impressão -
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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome 由 Aaron M. Wenger, Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard Hall, Gregory T. Concepcion, Jana Ebler, Arkarachai Fungtammasan, Alexey Kolesnikov, Nathan D. Olson, Armin Töpfer, Michael Alonge, Medhat Mahmoud, Yufeng Qian, Chen-Shan Chin, Adam M. Phillippy, Michael C. Schatz, Gene Myers, Mark A. DePristo, Jue Ruan, Tobias Marschall, Fritz J. Sedlazeck, Justin M. Zook, Heng Li, Sergey Koren, Andrew Carroll, David R. Rank, Michael W. Hunkapiller
出版 2019Artigo -
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Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing 由 Sneha D. Goenka, John E. Gorzynski, Kishwar Shafin, Dianna G. Fisk, Trevor Pesout, Tanner Jensen, Jean Monlong, Pi-Chuan Chang, Gunjan Baid, Jonathan A. Bernstein, Jeffrey W. Christle, Karen Dalton, Daniel R. Garalde, Megan E. Grove, Joseph Guillory, Alexey Kolesnikov, Maria Nattestad, Maura Ruzhnikov, Mehrzad Samadi, Ankit Sethia, Elizabeth Spiteri, Christopher J. Wright, Katherine Xiong, Tong Zhu, Miten Jain, Fritz J. Sedlazeck, Andrew Carroll, Benedict Paten, Euan A. Ashley
出版 2022Artigo
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