Search Results - Andreas Wilm

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  1. 1
    An enhanced RNA alignment benchmark for sequence alignment programs

    An enhanced RNA alignment benchmark for sequence alignment programs by Andreas Wilm, Indra Mainz, Gerhard Steger

    Published 2006
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  2. 2
    R-Coffee: a method for multiple alignment of non-coding RNA

    R-Coffee: a method for multiple alignment of non-coding RNA by Andreas Wilm, Desmond G. Higgins, Cédric Notredame

    Published 2008
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  3. 3
    S<scp>tr</scp>A<scp>l</scp>: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time

    S<scp>tr</scp>A<scp>l</scp>: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time by Deniz Dalli, Andreas Wilm, Indra Mainz, Gerhard Steger

    Published 2006
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  4. 4
    Making automated multiple alignments of very large numbers of protein sequences

    Making automated multiple alignments of very large numbers of protein sequences by Fabian Sievers, David Dineen, Andreas Wilm, Desmond G. Higgins

    Published 2013
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  5. 5
    R-Coffee: a web server for accurately aligning noncoding RNA sequences

    R-Coffee: a web server for accurately aligning noncoding RNA sequences by Sébastien Moretti, Andreas Wilm, Desmond G. Higgins, Ioannis Xénarios, Cédric Notredame

    Published 2008
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  6. 6
    Sequence embedding for fast construction of guide trees for multiple sequence alignment

    Sequence embedding for fast construction of guide trees for multiple sequence alignment by Gordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm, Desmond G. Higgins

    Published 2010
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  7. 7
    Fast and sensitive mapping of nanopore sequencing reads with GraphMap

    Fast and sensitive mapping of nanopore sequencing reads with GraphMap by Ivan Sović, Mile Šikić, Andreas Wilm, Shannon N. Fenlon, Swaine L. Chen, Niranjan Nagarajan

    Published 2016
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  8. 8
    INC-Seq: accurate single molecule reads using nanopore sequencing

    INC-Seq: accurate single molecule reads using nanopore sequencing by Chenhao Li, Kern Rei Chng, Esther J. H. Boey, Amanda Hui Qi Ng, Andreas Wilm, Niranjan Nagarajan

    Published 2016
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  9. 9
    Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

    Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences by Swee Hoe Ong, Vinutha Uppoor Kukkillaya, Andreas Wilm, Christophe Lay, Eliza Xin Pei Ho, Louie Low, Martin L. Hibberd, Niranjan Nagarajan

    Published 2013
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  10. 10
    LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

    LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets by Andreas Wilm, Pauline Aw, Denis Bertrand, Grace Yeo, Swee Hoe Ong, Chang Hua Wong, Chiea Chuen Khor, Rosemary Petric, Martin L. Hibberd, Niranjan Nagarajan

    Published 2012
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  11. 11
    Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints

    Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints by October M. Sessions, Andreas Wilm, Uma S. Kamaraj, Milly M. Choy, Angelia Chow, Yuwen Chong, Xin Mei Ong, Niranjan Nagarajan, Alex R. Cook, Eng Eong Ooi

    Published 2015
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  12. 12
    Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission

    Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission by Shuzhen Sim, Pauline Aw, Andreas Wilm, Garrett H. K. Teoh, Kien Duong Thi Hue, Nguyet Minh Nguyen, Niranjan Nagarajan, Cameron P. Simmons, Martin L. Hibberd

    Published 2015
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  13. 13
    Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

    Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega by Fabian Sievers, Andreas Wilm, David Dineen, Toby J. Gibson, Kevin Karplus, Weizhong Li, Rodrigo López, Hamish McWilliam, Michael Remmert, Johannes Söding, Julie Thompson, Desmond G. Higgins

    Published 2011
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  14. 14
    Clustal W and Clustal X version 2.0

    Clustal W and Clustal X version 2.0 by Mark Larkin, Gordon Blackshields, Nigel P. Brown, Chenna Ramu, Paul McGettigan, Hamish McWilliam, F. Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo López, Julie Thompson, Toby J. Gibson, Desmond G. Higgins

    Published 2007
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  15. 15
    In-depth analysis of human virus-specific CD8+ T cells delineates unique phenotypic signatures for T cell specificity prediction

    In-depth analysis of human virus-specific CD8+ T cells delineates unique phenotypic signatures for T cell specificity prediction by Florian Schmidt, Hannah Fields, Yovita Ida Purwanti, Ana Milojkovic, Syazwani Salim, Kan Xing Wu, Yannick Simoni, Antonella Vitiello, Daniel T. MacLeod, Alessandra Nardin, Evan W. Newell, Katja Fink, Andreas Wilm, Michael Fehlings

    Published 2023
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  16. 16
    BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads

    BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads by Lewis Z. Hong, Shuzhen Hong, Han Teng Wong, Pauline PK Aw, Yan Cheng, Andreas Wilm, Paola Flórez de Sessions, Seng Gee Lim, Niranjan Nagarajan, Martin L. Hibberd, Stephen R. Quake, William F. Burkholder

    Published 2014
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  17. 17
    In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

    In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation by Jong Ghut Ashley Aw, Yang Shen, Andreas Wilm, Miao Sun, Xin Ni Lim, Kum-Loong Boon, Sıdıka Tapşın, Yun-Shen Chan, Cheng-Peow Tan, Adelene Y. L. Sim, Tong Zhang, Teodorus Theo Susanto, Zhiyan Fu, Niranjan Nagarajan, Yue Wan

    Published 2016
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  18. 18
    A Randomized, Double-Blind Placebo Controlled Trial of Balapiravir, a Polymerase Inhibitor, in Adult Dengue Patients

    A Randomized, Double-Blind Placebo Controlled Trial of Balapiravir, a Polymerase Inhibitor, in Adult Dengue Patients by Nguyet Minh Nguyen, Chau Nguyen Tran, Phung Khanh Lam, Kien Thi Hue Duong, Huy Huynh, Jeremy Farrar, Quyen Than Ha Nguyen, Hien Tinh Tran, Nguyễn Văn Vĩnh Châu, Laura Merson, Long Hoàng, Martin L. Hibberd, Pauline Aw, Andreas Wilm, Niranjan Nagarajan, Dung Thi Nguyen, Phạm Phương, Truong Thanh Nguyen, Hassan Javanbakht, Klaus Klumpp, Janet Hammond, Rosemary Petric, Marcel Wolbers, Chinh Tran Nguyen, Cameron P. Simmons

    Published 2012
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  19. 19
    Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma

    Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma by Kern Rei Chng, Sock Hoai Chan, Amanda Hui Qi Ng, Chenhao Li, Apinya Jusakul, Denis Bertrand, Andreas Wilm, Su Pin Choo, Damien Meng Yew Tan, Kiat Hon Lim, Roy Soetinko, Choon Kiat Ong, Dan G. Duda, Simona Dima, Irinel Popescu, Chaisiri Wongkham, Feng Zhu, Khay Guan Yeoh, Bin Tean Teh, Puangrat Yongvanit, Sopit Wongkham, Vajaraphongsa Bhudhisawasdi, Narong Khuntikeo, Patrick Tan, Chawalit Pairojkul, Joanne Ngeow, Niranjan Nagarajan

    Published 2016
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  20. 20
    Structure mapping of dengue and Zika viruses reveals functional long-range interactions

    Structure mapping of dengue and Zika viruses reveals functional long-range interactions by Roland G. Huber, Xin Ni Lim, Wy Ching Ng, Adelene Y. L. Sim, Hui Xian Poh, Yang Shen, Su Ying Lim, Karin Sundström, Alfred Xuyang Sun, Jong Ghut Ashley Aw, Horng Khit Issac Too, Peng Hee Boey, Andreas Wilm, Tanu Chawla, Milly M. Choy, Lu Jiang, Paola Flórez de Sessions, Xian Jun Loh, Sylvie Alonso, Martin L. Hibberd, Niranjan Nagarajan, Eng Eong Ooi, Peter J. Bond, October M. Sessions, Yue Wan

    Published 2019
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