Search Results - Andrea Tanzer

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  1. 1
    Molecular Evolution of a MicroRNA Cluster

    Molecular Evolution of a MicroRNA Cluster by Andrea Tanzer, Peter F. Stadler

    Published 2004
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  2. 2
    RNA modifications in structure prediction – Status quo and future challenges

    RNA modifications in structure prediction – Status quo and future challenges by Andrea Tanzer, Ivo L. Hofacker, Ronny Lorenz

    Published 2018
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  3. 3
    Predicting RNA secondary structures from sequence and probing data

    Predicting RNA secondary structures from sequence and probing data by Ronny Lorenz, Michael T. Wolfinger, Andrea Tanzer, Ivo L. Hofacker

    Published 2016
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  4. 4
    AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements

    AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements by Jörg Fallmann, Vitaly Sedlyarov, Andrea Tanzer, Pavel Kovarik, Ivo L. Hofacker

    Published 2015
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  5. 5
    Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals

    Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals by Vincent J. Lynch, Andrea Tanzer, Yajun Wang, Frederick C. Leung, Birgit Gellersen, Deena Emera, Günter P. Wagner

    Published 2008
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  6. 6
    The expansion of the metazoan microRNA repertoire

    The expansion of the metazoan microRNA repertoire by Jana Hertel, Manuela Lindemeyer, Kristin Missal, Claudia Fried, Andrea Tanzer, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler

    Published 2006
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  7. 7
    Non-coding RNA annotation of the genome of Trichoplax adhaerens

    Non-coding RNA annotation of the genome of Trichoplax adhaerens by Jana Hertel, Daniëlle de Jong, Manja Marz, D W Rose, Hakim Tafer, Andrea Tanzer, Bernd Schierwater, Peter F. Stadler

    Published 2009
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  8. 8
    Folding Kinetics of Large RNAs

    Folding Kinetics of Large RNAs by Michael L. Geis, Christoph Flamm, Michael T. Wolfinger, Andrea Tanzer, Ivo L. Hofacker, Martin Middendorf, Christian W. Mandl, Peter F. Stadler, Caroline Thurner

    Published 2008
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  9. 9
    Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution

    Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution by Vitaly Sedlyarov, Jörg Fallmann, Florian Ebner, Jakob Huemer, Lucy Sneezum, Maša Ivin, Kristina Kreiner, Andrea Tanzer, Claus Vogl, Ivo L. Hofacker, Pavel Kovarik

    Published 2016
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  10. 10
    The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms

    The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms by Renata Kleinová, Vinod Rajendra, Alina F. Leuchtenberger, Claudio Lo Giudice, Cornelia Vesely, Utkarsh Kapoor, Andrea Tanzer, Sophia Derdak, Ernesto Picardi, Michael F. Jantsch

    Published 2023
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  11. 11
    A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

    A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection by Steve Hoffmann, Christian Otto, Gero Doose, Andrea Tanzer, David Langenberger, Sabina Christ, Manfred Kunz, Lesca M. Holdt, Daniel Teupser, Jörg Hackermüller, Peter F. Stadler

    Published 2014
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  12. 12
    Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library

    Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library by Hugo Y. K. Lam, Xinmeng Jasmine Mu, Adrian M. Stütz, Andrea Tanzer, Philip Cayting, M Snyder, Philip M. Kim, Jan O. Korbel, Mark Gerstein

    Published 2009
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  13. 13
    Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs

    Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs by Jules Deforges, Rodrigo S. Reis, Philippe Jacquet, Shaoline Sheppard, Veerendra P. Gadekar, Gene Hart‐Smith, Andrea Tanzer, Ivo L. Hofacker, Christian Iseli, Ioannis Xénarios, Yves Poirier

    Published 2019
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  14. 14
    The GENCODE pseudogene resource

    The GENCODE pseudogene resource by Baikang Pei, Cristina Sisu, Adam Frankish, Cédric Howald, Lukas Habegger, Xinmeng Jasmine Mu, Rachel Harte, Suganthi Balasubramanian, Andrea Tanzer, Mark Diekhans, Alexandre Reymond, Tim Hubbard, Jennifer Harrow, Mark Gerstein

    Published 2012
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  15. 15
    RNAs everywhere: genome‐wide annotation of structured RNAs

    RNAs everywhere: genome‐wide annotation of structured RNAs by Rolf Backofen, Stephan Wolf, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L. Hofacker, Kristin Missal, Axel Mosig, Sonja J. Prohaska, Dominic Rose, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will

    Published 2006
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  16. 16
    Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

    Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome by Cédric Howald, Andrea Tanzer, Jacqueline Chrast, Felix Kokocinski, Thomas Derrien, Nathalie Walters, José M. González, Adam Frankish, Bronwen Aken, Thibaut Hourlier, Jan-Hinnerk Vogel, Simon White, Stephen M. J. Searle, Jennifer Harrow, Tim Hubbard, Roderic Guigó, Alexandre Reymond

    Published 2012
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  17. 17
    Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq)

    Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq) by Julien Lagarde, Barbara Uszczyńska-Ratajczak, Javier Santoyo‐López, José M. González, Electra Tapanari, Jonathan M. Mudge, Charles A. Steward, Laurens Wilming, Andrea Tanzer, Cédric Howald, Jacqueline Chrast, Alicia Vela‐Boza, Antonio Rueda, Francisco J. López-Domingo, Joaquı́n Dopazo, Alexandre Reymond, Roderic Guigó, Jennifer Harrow

    Published 2016
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  18. 18
    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression by Dmitri D. Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie Davis, Pablo Prieto, Alexander Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei Hoon See, Meagan Fastuca, Jörg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, M Beer, Cédric Notredame, Roderic Guigó, T Gingeras

    Published 2015
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  19. 19
    Structured RNAs in the ENCODE selected regions of the human genome

    Structured RNAs in the ENCODE selected regions of the human genome by Stefan Washietl, Jakob Skou Pedersen, Jan O. Korbel, Claudia Stocsits, Andreas Gruber, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E. Antonarakis, France Denœud, Julien Lagarde, Jörg Drenkow, Philipp Kapranov, T Gingeras, Roderic Guigó, M Snyder, Mark Gerstein, Alexandre Reymond, Ivo L. Hofacker, Peter F. Stadler

    Published 2007
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  20. 20
    The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

    The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression by Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Grégory Guernec, David Martı́n, Angelika Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Yijun Ruan, Timo Lassmann, Piero Carninci, James Brown, Leonard Lipovich, José M. González, Mark Thomas, Carrie Davis, Ramin Shiekhattar, T Gingeras, Tim Hubbard, Cédric Notredame, Jennifer Harrow, Roderic Guigó

    Published 2012
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