Ohcanbohtosat - Anandakrishnan, Ramu

A Partition Function Approximation Using Elementary Symmetric Functions Dahkki Anandakrishnan, Ramu

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An N log N approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions Dahkki Anandakrishnan, Ramu, Onufriev, Alexey V.

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Biophysical comparison of ATP-driven proton pumping mechanisms suggests a kinetic advantage for the rotary process depending on coupling ratio Dahkki Anandakrishnan, Ramu, Zuckerman, Daniel M.

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Functional bias in molecular evolution rate of Arabidopsis thaliana Dahkki Warren, Andrew S, Anandakrishnan, Ramu, Zhang, Liqing

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H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations Dahkki Anandakrishnan, Ramu, Aguilar, Boris, Onufriev, Alexey V.

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Building Water Models: A Different Approach Dahkki Izadi, Saeed, Anandakrishnan, Ramu, Onufriev, Alexey V.

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Implicit Solvent Model for Million-Atom Atomistic Simulations: Insights into the Organization of 30-nm Chromatin Fiber Dahkki Izadi, Saeed, Anandakrishnan, Ramu, Onufriev, Alexey V.

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Application of Machine Learning Method in Genomics and Proteomics Dahkki Lin, Hao, Chen, Wei, Anandakrishnan, Ramu, Plewczynski, Dariusz

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Point Charges Optimally Placed to Represent the Multipole Expansion of Charge Distributions Dahkki Anandakrishnan, Ramu, Baker, Charles, Izadi, Saeed, Onufriev, Alexey V.

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Crossing complexity of space-filling curves reveals entanglement of S-phase DNA Dahkki Kinney, Nick, Hickman, Molly, Anandakrishnan, Ramu, Garner, Harold R.

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Statistics and Physical Origins of pK and Ionization State Changes upon Protein-Ligand Binding Dahkki Aguilar, Boris, Anandakrishnan, Ramu, Ruscio, Jory Z., Onufriev, Alexey V.

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Speed of Conformational Change: Comparing Explicit and Implicit Solvent Molecular Dynamics Simulations Dahkki Anandakrishnan, Ramu, Drozdetski, Aleksander, Walker, Ross C., Onufriev, Alexey V.

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Biophysical comparison of ATP synthesis mechanisms shows a kinetic advantage for the rotary process Dahkki Anandakrishnan, Ramu, Zhang, Zining, Donovan-Maiye, Rory, Zuckerman, Daniel M.

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ZDHHC3 as a Risk and Mortality Marker for Breast Cancer in African American Women Dahkki Kinney, Nick, Varghese, Robin T, Anandakrishnan, Ramu, Garner, Harold R “Skip”

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Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core Dahkki Fenley, Andrew T., Anandakrishnan, Ramu, Kidane, Yared H., Onufriev, Alexey V.

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Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations Dahkki Anandakrishnan, Ramu, Varghese, Robin T., Kinney, Nicholas A., Garner, Harold R.

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Identifying multi-hit carcinogenic gene combinations: Scaling up a weighted set cover algorithm using compressed binary matrix representation on a GPU Dahkki Al Hajri, Qais, Dash, Sajal, Feng, Wu-chun, Garner, Harold R., Anandakrishnan, Ramu

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Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations Dahkki Dash, Sajal, Kinney, Nicholas A., Varghese, Robin T., Garner, Harold R., Feng, Wu-chun, Anandakrishnan, Ramu

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Author Correction: Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations Dahkki Dash, Sajal, Kinney, Nicholas A., Varghese, Robin T., Garner, Harold R., Feng, Wu-chun, Anandakrishnan, Ramu

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Accelerating Electrostatic Surface Potential Calculation with Multiscale Approximation on Graphics Processing Units Dahkki Anandakrishnan, Ramu, Scogland, Tom R. W., Fenley, Andrew T., Gordon, John C., Feng, Wu-chun, Onufriev, Alexey V.

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