Ngā hua rapu - Almeida, Mathieu

Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing mā Plaza Oñate, Florian, Roume, Hugo, Almeida, Mathieu

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StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs mā Da Silva, Kévin, Pons, Nicolas, Berland, Magali, Plaza Oñate, Florian, Almeida, Mathieu, Peterlongo, Pierre

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Capturing the most wanted taxa through cross-sample correlations mā Almeida, Mathieu, Pop, Mihai, Le Chatelier, Emmanuelle, Prifti, Edi, Pons, Nicolas, Ghozlane, Amine, Ehrlich, S Dusko

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Bacterial Consumption of T4 Phages mā Godon, Jean-Jacques, Bize, Ariane, Ngo, Hoang, Cauquil, Laurent, Almeida, Mathieu, Petit, Marie-Agnès, Zemb, Olivier

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Complete Genome Sequence of the Pigmented Streptococcus thermophilus Strain JIM8232 mā Delorme, Christine, Bartholini, Claire, Luraschi, Mélanie, Pons, Nicolas, Loux, Valentin, Almeida, Mathieu, Guédon, Eric, Gibrat, Jean-François, Renault, Pierre

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MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data mā Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Almeida, Mathieu, Cervino, Alessandra C L, Gauthier, Franck, Magoulès, Frédéric, Ehrlich, S Dusko, Pichaud, Matthieu

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Complete Genome Sequences of the Human Pathogen Paenibacillus thiaminolyticus Mbale and Type Strain P. thiaminolyticus NRRL B-4156 mā Hehnly, Christine, Zhang, Lijun, Paulson, Joseph N., Almeida, Mathieu, von Bredow, Benjamin, Wijetunge, Dona S. S., Galperin, Michael Y., Sheldon, Kathryn, Schiff, Steven J., Broach, James R.

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Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1 mā Rashid, Mahamud-ur, Almeida, Mathieu, Azman, Andrew S., Lindsay, Brianna R., Sack, David A., Colwell, Rita R., Huq, Anwar, Morris, J. Glenn, Alam, Munirul, Stine, O. Colin

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Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS mā Bwire, Godfrey, Sack, David A., Almeida, Mathieu, Li, Shan, Voeglein, Joseph B., Debes, Amanda Kay, Kagirita, Atek, Buyinza, Ambrose Wabwire, Orach, Christopher Garimoi, Stine, O. Colin

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Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing mā Garrine, Marcelino, Mandomando, Inácio, Vubil, Delfino, Nhampossa, Tacilta, Acacio, Sozinho, Li, Shan, Paulson, Joseph N., Almeida, Mathieu, Domman, Daryl, Thomson, Nicholas R., Alonso, Pedro, Stine, Oscar Colin

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A Retrospective Case–Control Study of the Relationship between the Gut Microbiota, Enteropathy, and Child Growth mā Perin, Jamie, Burrowes, Vanessa, Almeida, Mathieu, Ahmed, Shahnawaz, Haque, Rashidul, Parvin, Tahmina, Biswas, Shwapon, Azmi, Ishrat J., Bhuyian, Sazzadul Islam, Talukder, Kaisar A., Faruque, Abu G., Stine, O. Colin, George, Christine Marie

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Complete Genome Sequence of the Clinical Streptococcus salivarius Strain CCHSS3 mā Delorme, Christine, Guédon, Eric, Pons, Nicolas, Cruaud, Corinne, Couloux, Arnaud, Loux, Valentin, Chiapello, Hélène, Poyart, Claire, Gautier, Céline, Sanchez, Nicolas, Almeida, Mathieu, Kennedy, Sean P., Ehrlich, S. Dusko, Gibrat, Jean-François, Wincker, Patrick, Renault, Pierre

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Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products mā Almeida, Mathieu, Hébert, Agnès, Abraham, Anne-Laure, Rasmussen, Simon, Monnet, Christophe, Pons, Nicolas, Delbès, Céline, Loux, Valentin, Batto, Jean-Michel, Leonard, Pierre, Kennedy, Sean, Ehrlich, Stanislas Dusko, Pop, Mihai, Montel, Marie-Christine, Irlinger, Françoise, Renault, Pierre

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Complete Genome Sequence of the Commensal Streptococcus salivarius Strain JIM8777 mā Guédon, Eric, Delorme, Christine, Pons, Nicolas, Cruaud, Corinne, Loux, Valentin, Couloux, Arnaud, Gautier, Céline, Sanchez, Nicolas, Layec, Séverine, Galleron, Nathalie, Almeida, Mathieu, van de Guchte, Maarten, Kennedy, Sean P., Ehrlich, S. Dusko, Gibrat, Jean-François, Wincker, Patrick, Renault, Pierre

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Direct Detection of Shigella in Stool Specimens by Use of a Metagenomic Approach mā Liu, Jie, Almeida, Mathieu, Kabir, Furqan, Shakoor, Sadia, Qureshi, Shahida, Zaidi, Anita, Li, Shan, Tamboura, Boubou, Sow, Samba O., Mandomando, Inacio, Alonso, Pedro L., Ramamurthy, Thandavarayan, Sur, Dipika, Kotloff, Karen, Nataro, James, Levine, Myron M., Stine, O. Colin, Houpt, Eric

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Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia mā Mwaba, John, Debes, Amanda K., Murt, Kelsey N., Shea, Patrick, Simuyandi, Michelo, Laban, Natasha, Kazimbaya, Katayi, Chisenga, Caroline, Li, Shan, Almeida, Mathieu, Meisel, Jacquelyn S., Shibemba, Aaron, Kantenga, Timothy, Mukonka, Victor, Kwenda, Geoffrey, Sack, David A., Chilengi, Roma, Stine, O. Colin

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Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh mā George, Christine Marie, Rashid, Mahamud, Almeida, Mathieu, Saif-Ur-Rahman, K. M., Monira, Shirajum, Bhuyian, Md. Sazzadul Islam, Hasan, Khaled, Mahmud, Toslim T., Li, Shan, Brubaker, Jessica, Perin, Jamie, Rahman, Zillur, Mustafiz, Munshi, Sack, David A., Sack, R. Bradley, Alam, Munirul, Stine, O. Colin

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The Bacterial and Viral Complexity of Postinfectious Hydrocephalus in Uganda mā Paulson, Joseph N., Williams, Brent L., Hehnly, Christine, Mishra, Nischay, Sinnar, Shamim A., Zhang, Lijun, Ssentongo, Paddy, Mbabazi-Kabachelor, Edith, Wijetunge, Dona S. S., von Bredow, Benjamin, Mulondo, Ronnie, Kiwanuka, Julius, Bajunirwe, Francis, Bazira, Joel, Bebell, Lisa M., Burgoine, Kathy, Couto-Rodriguez, Mara, Ericson, Jessica E., Erickson, Tim, Ferrari, Matthew, Gladstone, Melissa, Guo, Cheng, Haran, Murali, Hornig, Mady, Isaacs, Albert M., Nsubuga Kaaya, Brian, Kangere, Sheila M., Kulkarni, Abhaya V., Kumbakumba, Elias, Li, Xiaoxiao, Limbrick, David D., Magombe, Joshua, Morton, Sarah U., Mugamba, John, Ng, James, Olupot-Olupot, Peter, Onen, Justin, Peterson, Mallory R., Roy, Farrah, Sheldon, Kathryn, Townsend, Reid, Weeks, Andrew D., Whalen, Andrew J., Quackenbush, John, Ssenyonga, Peter, Galperin, Michael Y., Almeida, Mathieu, Atkins, Hannah, Warf, Benjamin C., Lipkin, W. Ian, Broach, James R., Schiff, Steven J.

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