检索结果 - Alla Mikheenko

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  1. 1
    MetaQUAST: evaluation of metagenome assemblies

    MetaQUAST: evaluation of metagenome assemblies 由 Alla Mikheenko, Vladislav Saveliev, Alexey Gurevich

    出版 2015
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  2. 2
    WebQUAST: online evaluation of genome assemblies

    WebQUAST: online evaluation of genome assemblies 由 Alla Mikheenko, Vladislav Saveliev, Pascal Hirsch, Alexey Gurevich

    出版 2023
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  3. 3
    Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

    Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns 由 Alla Mikheenko, Andrey D. Prjibelski, Anoushka Joglekar, Hagen Tilgner

    出版 2022
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  4. 4
    Icarus: visualizer for <i>de novo</i> assembly evaluation

    Icarus: visualizer for <i>de novo</i> assembly evaluation 由 Alla Mikheenko, Gleb Valin, Andrey D. Prjibelski, Vladislav Saveliev, Alexey Gurevich

    出版 2016
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  5. 5
    Versatile genome assembly evaluation with QUAST-LG

    Versatile genome assembly evaluation with QUAST-LG 由 Alla Mikheenko, Andrey D. Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey Gurevich

    出版 2018
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  6. 6
    Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra

    Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra 由 Alexey Gurevich, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Hosein Mohimani, Pavel A. Pevzner

    出版 2018
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  7. 7
    TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

    TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats 由 Alla Mikheenko, Andrey V. Bzikadze, Alexey Gurevich, Karen H. Miga, Pavel A. Pevzner

    出版 2020
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  8. 8
    Dereplication of peptidic natural products through database search of mass spectra

    Dereplication of peptidic natural products through database search of mass spectra 由 Hosein Mohimani, Alexey Gurevich, Alla Mikheenko, Neha Garg, Louis‐Félix Nothias, Akihiro Ninomiya, Kentaro Takada, Pieter C. Dorrestein, Pavel A. Pevzner

    出版 2016
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  9. 9
    Dereplication of microbial metabolites through database search of mass spectra

    Dereplication of microbial metabolites through database search of mass spectra 由 Hosein Mohimani, Alexey Gurevich, Alexander Shlemov, Alla Mikheenko, Anton Korobeynikov, Liu Cao, Egor Shcherbin, Louis‐Félix Nothias, Pieter C. Dorrestein, Pavel A. Pevzner

    出版 2018
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  10. 10
    Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

    Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies 由 Ann M. Mc Cartney, Kishwar Shafin, Michael Alonge, Andrey V. Bzikadze, Giulio Formenti, Arkarachai Fungtammasan, Kerstin Howe, Chirag Jain, Sergey Koren, Glennis A. Logsdon, Karen H. Miga, Alla Mikheenko, Benedict Paten, Alaina Shumate, Daniela C. Soto, Ivan Sović, Jonathan Wood, Justin M. Zook, Adam M. Phillippy, Arang Rhie

    出版 2022
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  11. 11
    TDP-43 loss induces extensive cryptic polyadenylation in ALS/FTD

    TDP-43 loss induces extensive cryptic polyadenylation in ALS/FTD 由 Sam Bryce-Smith, Anna‐Leigh Brown, Puja R. Mehta, Francesca Mattedi, Alla Mikheenko, Simone Barattucci, Matteo Zanovello, Dario Dattilo, Matthew Yome, Sarah E. Hill, Yue Qi, Oscar G. Wilkins, Kai Sun, Eugeni Ryadnov, Yixuan Wan, Jose Norberto S. Vargas, Nicol Birsa, Towfique Raj, Jack Humphrey, Matthew J. Keuss, Michael E. Ward, Maria Secrier, Pietro Fratta

    出版 2024
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  12. 12
    Neuronal polyunsaturated fatty acids are protective in ALS/FTD

    Neuronal polyunsaturated fatty acids are protective in ALS/FTD 由 Ashling Giblin, Alexander J. Cammack, Niek Blomberg, Sharifah Anoar, Alla Mikheenko, Mireia Carcolé, Magda L. Atilano, Alexander Hull, Dunxin Shen, Xiao‐Ya Wei, Rachel Coneys, Lele Zhou, Yassene Mohammed, Damien Olivier‐Jimenez, Lian Wang, Kerri J. Kinghorn, Teresa Niccoli, Alyssa N. Coyne, Rik van der Kant, Tammaryn Lashley, Martin Giera, Linda Partridge, Adrian M. Isaacs

    出版 2025
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  13. 13
    MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

    MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities 由 Liu Cao, Alexey Gurevich, Kelsey L. Alexander, C. Benjamin Naman, Tiago Leão, Evgenia Glukhov, Tal Luzzatto‐Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani, Louis‐Félix Nothias, Nitin K. Singh, Jon G. Sanders, Rodolfo Antonio Salido Benítez, Luke Thompson, Md-Nafiz Hamid, James T. Morton, Alla Mikheenko, Alexander Shlemov, Anton Korobeynikov, Iddo Friedberg, Rob Knight, Kasthuri Venkateswaran, William H. Gerwick, Lena Gerwick, Pieter C. Dorrestein, Pavel A. Pevzner, Hosein Mohimani

    出版 2019
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  14. 14
    Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue

    Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue 由 Simon A. Hardwick, Wen Hu, Anoushka Joglekar, Li Fan, Paul Collier, Careen Foord, Jennifer Balacco, Samantha N. Lanjewar, Maureen M. Sampson, Frank Koopmans, Andrey D. Prjibelski, Alla Mikheenko, Natan Belchikov, Julien Jarroux, Anne Bergstrom Lucas, Miklós Palkovits, Wenjie Luo, Teresa A. Milner, Lishomwa C. Ndhlovu, August B. Smit, John Q. Trojanowski, Virginia M.‐Y. Lee, Olivier Fédrigo, Steven A. Sloan, Dóra Tombácz, M. Elizabeth Ross, Erich D. Jarvis, Zsolt Boldogkői, Li Gan, Hagen Tilgner

    出版 2022
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  15. 15
    Dual-targeting CRISPR-CasRx reduces C9orf72 ALS/FTD sense and antisense repeat RNAs in vitro and in vivo

    Dual-targeting CRISPR-CasRx reduces C9orf72 ALS/FTD sense and antisense repeat RNAs in vitro and in vivo 由 Liam Kempthorne, Deniz Vaizoglu, Alexander J. Cammack, Mireia Carcolé, Maxine P. Roberts, Alla Mikheenko, Alessia Fisher, Pacharaporn Suklai, Bhavana Muralidharan, François Kroll, Thomas G. Moens, Lidia Yshii, Stijn Verschoren, Benedikt V. Hölbling, Francisco C. Moreira, Eszter Katona, Rachel Coneys, Paula de Oliveira, Yong-Jie Zhang, Karen Jansen, Lillian M. Daughrity, Alexander McGown, Tennore Ramesh, Ludo Van Den Bosch, Gabriele Lignani, Rahimin Affandi Abdul Rahim, Alyssa N. Coyne, Leonard Petrucelli, Jason Rihel, Adrian M. Isaacs

    出版 2025
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  16. 16
    PolyGR and polyPR knock-in mice reveal a conserved neuroprotective extracellular matrix signature in C9orf72 ALS/FTD neurons

    PolyGR and polyPR knock-in mice reveal a conserved neuroprotective extracellular matrix signature in C9orf72 ALS/FTD neurons 由 Carmelo Milioto, Mireia Carcolé, Ashling Giblin, Rachel Coneys, Olivia N. Attrebi, Mhoriam Ahmed, Sam Harris, Byung Il Lee, Mengke Yang, Robert Ellingford, Raja Sekhar Nirujogi, Daniel Biggs, Sally Salomonsson, Matteo Zanovello, Paula de Oliveira, Eszter Katona, Idoia Glaria, Alla Mikheenko, Bethany Geary, Evan Udine, Deniz Vaizoglu, Sharifah Anoar, Khrisha Jotangiya, Gerard Crowley, Demelza Smeeth, Mirjam L. Adams, Teresa Niccoli, Rosa Rademakers, Marka van Blitterswijk, Anny Devoy, Soyon Hong, Linda Partridge, Alyssa N. Coyne, Pietro Fratta, Dario R. Alessi, Benjamin Davies, Marc Aurel Busche, Linda Greensmith, Elizabeth Fisher, Adrian M. Isaacs

    出版 2024
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  17. 17
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification 由 Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrández-Peral, Natàlia García‐Reyero, Stefan Goetz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks

    出版 2023
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  18. 18
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification 由 Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley M. Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Alyssa Cousineau, Namrita Dhillon, José M. Fernández, Luis Ferrández-Peral, Natàlia Garcia-Reyero, Stefan Götz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Xingjie Ren, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, René Maehr, Yin Shen, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks

    出版 2024
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