Ohcanbohtosat - Alexeyenko, Andrey

NEArender: an R package for functional interpretation of ‘omics’ data via network enrichment analysis Dahkki Jeggari, Ashwini, Alexeyenko, Andrey

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Individualized discovery of rare cancer drivers in global network context Dahkki Petrov, Iurii, Alexeyenko, Andrey

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Global networks of functional coupling in eukaryotes from comprehensive data integration Dahkki Alexeyenko, Andrey, Sonnhammer, Erik L.L.

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Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis Dahkki Merid, Simon Kebede, Goranskaya, Daria, Alexeyenko, Andrey

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Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD Dahkki Heijtz, Rochellys Diaz, Alexeyenko, Andrey, Castellanos, F Xavier

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The regulation of hydroxysteroid 17β-dehydrogenase type 1 and 2 gene expression in breast cancer cell lines by estradiol, dihydrotestosterone, microRNAs, and genes related to breas... Dahkki Hilborn, Erik, Stål, Olle, Alexeyenko, Andrey, Jansson, Agneta

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Network Analysis of Functional Genomics Data: Application to Avian Sex-Biased Gene Expression Dahkki Frings, Oliver, Mank, Judith E., Alexeyenko, Andrey, Sonnhammer, Erik L. L.

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Statistical Assessment of Crosstalk Enrichment between Gene Groups in Biological Networks Dahkki McCormack, Theodore, Frings, Oliver, Alexeyenko, Andrey, Sonnhammer, Erik L. L.

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Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis Dahkki Brink, Mikael, Lundquist, Anders, Alexeyenko, Andrey, Lejon, Kristina, Rantapää-Dahlqvist, Solbritt

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Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data Dahkki Franco, Marcela, Jeggari, Ashwini, Peuget, Sylvain, Böttger, Franziska, Selivanova, Galina, Alexeyenko, Andrey

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EviNet: a web platform for network enrichment analysis with flexible definition of gene sets Dahkki Jeggari, Ashwini, Alekseenko, Zhanna, Petrov, Iurii, Dias, José M, Ericson, Johan, Alexeyenko, Andrey

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Comparative interactomics with Funcoup 2.0 Dahkki Alexeyenko, Andrey, Schmitt, Thomas, Tjärnberg, Andreas, Guala, Dmitri, Frings, Oliver, Sonnhammer, Erik L. L.

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Network enrichment analysis: extension of gene-set enrichment analysis to gene networks Dahkki Alexeyenko, Andrey, Lee, Woojoo, Pernemalm, Maria, Guegan, Justin, Dessen, Philippe, Lazar, Vladimir, Lehtiö, Janne, Pawitan, Yudi

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Identifying and Assessing Interesting Subgroups in a Heterogeneous Population Dahkki Lee, Woojoo, Alexeyenko, Andrey, Pernemalm, Maria, Guegan, Justine, Dessen, Philippe, Lazar, Vladimir, Lehtiö, Janne, Pawitan, Yudi

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Novel Genes and Pathways Modulated by Syndecan-1: Implications for the Proliferation and Cell-Cycle Regulation of Malignant Mesothelioma Cells Dahkki Szatmári, Tünde, Mundt, Filip, Heidari-Hamedani, Ghazal, Zong, Fang, Ferolla, Elena, Alexeyenko, Andrey, Hjerpe, Anders, Dobra, Katalin

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Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent Dahkki Alkasalias, Twana, Flaberg, Emilie, Kashuba, Vladimir, Alexeyenko, Andrey, Pavlova, Tatiana, Savchenko, Andrii, Szekely, Laszlo, Klein, George, Guven, Hayrettin

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Dynamic Zebrafish Interactome Reveals Transcriptional Mechanisms of Dioxin Toxicity Dahkki Alexeyenko, Andrey, Wassenberg, Deena M., Lobenhofer, Edward K., Yen, Jerry, Linney, Elwood, Sonnhammer, Erik L. L., Meyer, Joel N.

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Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome Dahkki Ramqvist, Torbjörn, Näsman, Anders, Franzén, Bo, Bersani, Cinzia, Alexeyenko, Andrey, Becker, Susanne, Haeggblom, Linnea, Kolev, Aeneas, Dalianis, Tina, Munck-Wikland, Eva

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Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines Dahkki Akan, Pelin, Alexeyenko, Andrey, Costea, Paul Igor, Hedberg, Lilia, Solnestam, Beata Werne, Lundin, Sverker, Hällman, Jimmie, Lundberg, Emma, Uhlén, Mathias, Lundeberg, Joakim

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Protein profiling of fine‐needle aspirates reveals subtype‐associated immune signatures and involvement of chemokines in breast cancer Dahkki Franzén, Bo, Alexeyenko, Andrey, Kamali‐Moghaddam, Masood, Hatschek, Thomas, Kanter, Lena, Ramqvist, Torbjörn, Kierkegaard, Jonas, Masucci, Giuseppe, Auer, Gert, Landegren, Ulf, Lewensohn, Rolf

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