Search Results - Alexeyenko, Andrey

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  1. 1
    NEArender: an R package for functional interpretation of ‘omics’ data via network enrichment analysis

    NEArender: an R package for functional interpretation of ‘omics’ data via network enrichment analysis by Jeggari, Ashwini, Alexeyenko, Andrey

    Published 2017
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  2. 2
    Individualized discovery of rare cancer drivers in global network context

    Individualized discovery of rare cancer drivers in global network context by Petrov, Iurii, Alexeyenko, Andrey

    Published 2022
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  3. 3
    Global networks of functional coupling in eukaryotes from comprehensive data integration

    Global networks of functional coupling in eukaryotes from comprehensive data integration by Alexeyenko, Andrey, Sonnhammer, Erik L.L.

    Published 2009
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  4. 4
    Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis

    Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis by Merid, Simon Kebede, Goranskaya, Daria, Alexeyenko, Andrey

    Published 2014
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  5. 5
    Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD

    Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD by Heijtz, Rochellys Diaz, Alexeyenko, Andrey, Castellanos, F Xavier

    Published 2007
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  6. 6
    The regulation of hydroxysteroid 17β-dehydrogenase type 1 and 2 gene expression in breast cancer cell lines by estradiol, dihydrotestosterone, microRNAs, and genes related to breast cancer

    The regulation of hydroxysteroid 17β-dehydrogenase type 1 and 2 gene expression in breast cancer cell lines by estradiol, dihydrotestosterone, microRNAs, and genes related to breas... by Hilborn, Erik, Stål, Olle, Alexeyenko, Andrey, Jansson, Agneta

    Published 2017
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  7. 7
    Network Analysis of Functional Genomics Data: Application to Avian Sex-Biased Gene Expression

    Network Analysis of Functional Genomics Data: Application to Avian Sex-Biased Gene Expression by Frings, Oliver, Mank, Judith E., Alexeyenko, Andrey, Sonnhammer, Erik L. L.

    Published 2012
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  8. 8
    Statistical Assessment of Crosstalk Enrichment between Gene Groups in Biological Networks

    Statistical Assessment of Crosstalk Enrichment between Gene Groups in Biological Networks by McCormack, Theodore, Frings, Oliver, Alexeyenko, Andrey, Sonnhammer, Erik L. L.

    Published 2013
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  9. 9
    Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis

    Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis by Brink, Mikael, Lundquist, Anders, Alexeyenko, Andrey, Lejon, Kristina, Rantapää-Dahlqvist, Solbritt

    Published 2019
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  10. 10
    Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data

    Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data by Franco, Marcela, Jeggari, Ashwini, Peuget, Sylvain, Böttger, Franziska, Selivanova, Galina, Alexeyenko, Andrey

    Published 2019
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  11. 11
    EviNet: a web platform for network enrichment analysis with flexible definition of gene sets

    EviNet: a web platform for network enrichment analysis with flexible definition of gene sets by Jeggari, Ashwini, Alekseenko, Zhanna, Petrov, Iurii, Dias, José M, Ericson, Johan, Alexeyenko, Andrey

    Published 2018
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  12. 12
    Comparative interactomics with Funcoup 2.0

    Comparative interactomics with Funcoup 2.0 by Alexeyenko, Andrey, Schmitt, Thomas, Tjärnberg, Andreas, Guala, Dmitri, Frings, Oliver, Sonnhammer, Erik L. L.

    Published 2012
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  13. 13
    Network enrichment analysis: extension of gene-set enrichment analysis to gene networks

    Network enrichment analysis: extension of gene-set enrichment analysis to gene networks by Alexeyenko, Andrey, Lee, Woojoo, Pernemalm, Maria, Guegan, Justin, Dessen, Philippe, Lazar, Vladimir, Lehtiö, Janne, Pawitan, Yudi

    Published 2012
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  14. 14
    Identifying and Assessing Interesting Subgroups in a Heterogeneous Population

    Identifying and Assessing Interesting Subgroups in a Heterogeneous Population by Lee, Woojoo, Alexeyenko, Andrey, Pernemalm, Maria, Guegan, Justine, Dessen, Philippe, Lazar, Vladimir, Lehtiö, Janne, Pawitan, Yudi

    Published 2015
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  15. 15
    Novel Genes and Pathways Modulated by Syndecan-1: Implications for the Proliferation and Cell-Cycle Regulation of Malignant Mesothelioma Cells

    Novel Genes and Pathways Modulated by Syndecan-1: Implications for the Proliferation and Cell-Cycle Regulation of Malignant Mesothelioma Cells by Szatmári, Tünde, Mundt, Filip, Heidari-Hamedani, Ghazal, Zong, Fang, Ferolla, Elena, Alexeyenko, Andrey, Hjerpe, Anders, Dobra, Katalin

    Published 2012
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  16. 16
    Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent

    Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent by Alkasalias, Twana, Flaberg, Emilie, Kashuba, Vladimir, Alexeyenko, Andrey, Pavlova, Tatiana, Savchenko, Andrii, Szekely, Laszlo, Klein, George, Guven, Hayrettin

    Published 2014
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  17. 17
    Dynamic Zebrafish Interactome Reveals Transcriptional Mechanisms of Dioxin Toxicity

    Dynamic Zebrafish Interactome Reveals Transcriptional Mechanisms of Dioxin Toxicity by Alexeyenko, Andrey, Wassenberg, Deena M., Lobenhofer, Edward K., Yen, Jerry, Linney, Elwood, Sonnhammer, Erik L. L., Meyer, Joel N.

    Published 2010
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  18. 18
    Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome

    Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome by Ramqvist, Torbjörn, Näsman, Anders, Franzén, Bo, Bersani, Cinzia, Alexeyenko, Andrey, Becker, Susanne, Haeggblom, Linnea, Kolev, Aeneas, Dalianis, Tina, Munck-Wikland, Eva

    Published 2018
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  19. 19
    Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines

    Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines by Akan, Pelin, Alexeyenko, Andrey, Costea, Paul Igor, Hedberg, Lilia, Solnestam, Beata Werne, Lundin, Sverker, Hällman, Jimmie, Lundberg, Emma, Uhlén, Mathias, Lundeberg, Joakim

    Published 2012
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  20. 20
    Protein profiling of fine‐needle aspirates reveals subtype‐associated immune signatures and involvement of chemokines in breast cancer

    Protein profiling of fine‐needle aspirates reveals subtype‐associated immune signatures and involvement of chemokines in breast cancer by Franzén, Bo, Alexeyenko, Andrey, Kamali‐Moghaddam, Masood, Hatschek, Thomas, Kanter, Lena, Ramqvist, Torbjörn, Kierkegaard, Jonas, Masucci, Giuseppe, Auer, Gert, Landegren, Ulf, Lewensohn, Rolf

    Published 2019
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