Search Results - Alexander E. Urban

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  1. 1
    Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans

    Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans by Rajini Haraksingh, Alexej Abyzov, Alexander E. Urban

    Published 2017
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  2. 2
    Structural variation in the sequencing era

    Structural variation in the sequencing era by Steve S. Ho, Alexander E. Urban, Ryan E. Mills

    Published 2019
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  3. 3
    CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

    CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing by Alexej Abyzov, Alexander E. Urban, M Snyder, Mark Gerstein

    Published 2011
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  4. 4
    Genome-Wide Mapping of Copy Number Variation in Humans: Comparative Analysis of High Resolution Array Platforms

    Genome-Wide Mapping of Copy Number Variation in Humans: Comparative Analysis of High Resolution Array Platforms by Rajini Haraksingh, Alexej Abyzov, Mark Gerstein, Alexander E. Urban, M Snyder

    Published 2011
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  5. 5
    Whole-genome sequencing analysis of CNV using low-coverage and paired-end strategies is efficient and outperforms array-based CNV analysis

    Whole-genome sequencing analysis of CNV using low-coverage and paired-end strategies is efficient and outperforms array-based CNV analysis by Bo Zhou, Steve S. Ho, Xianglong Zhang, Reenal Pattni, Rajini Haraksingh, Alexander E. Urban

    Published 2018
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  6. 6
    Extensive genetic variation in somatic human tissues

    Extensive genetic variation in somatic human tissues by Maeve O’Huallachain, Konrad J. Karczewski, Sherman M. Weissman, Alexander E. Urban, M Snyder

    Published 2012
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  7. 7
    MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment

    MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment by Mattia Pelizzola, Yasuo Koga, Alexander E. Urban, Michael Krauthammer, Sherman M. Weissman, Ruth Halaban, Annette M. Molinaro

    Published 2008
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  8. 8
    Normalizing RNA-Sequencing Data by Modeling Hidden Covariates with Prior Knowledge

    Normalizing RNA-Sequencing Data by Modeling Hidden Covariates with Prior Knowledge by Sara Mostafavi, Alexis Battle, Xiaowei Zhu, Alexander E. Urban, Douglas F. Levinson, Stephen B. Montgomery, Daphne Koller

    Published 2013
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  9. 9
    A procedure for highly specific, sensitive, and unbiased whole-genome amplification

    A procedure for highly specific, sensitive, and unbiased whole-genome amplification by Xinghua Pan, Alexander E. Urban, Dean Palejev, Vincent Schulz, Fabian Grubert, Yiping Hu, M Snyder, Sherman M. Weissman

    Published 2008
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  10. 10
    Identification of genomic indels and structural variations using split reads

    Identification of genomic indels and structural variations using split reads by Zhengdong D. Zhang, Jiang Du, Hugo Y. K. Lam, Alexej Abyzov, Alexander E. Urban, M Snyder, Mark Gerstein

    Published 2011
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  11. 11
    The current excitement about copy-number variation: how it relates to gene duplications and protein families

    The current excitement about copy-number variation: how it relates to gene duplications and protein families by Jan O. Korbel, Philip M. Kim, Xueying Chen, Alexander E. Urban, Sherman M. Weissman, M Snyder, Mark Gerstein

    Published 2008
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  12. 12
    Neural signatures of sleep in zebrafish

    Neural signatures of sleep in zebrafish by Louis C. Leung, Gordon Wang, Romain Madelaine, Gemini Skariah, Koichi Kawakami, Karl Deisseroth, Alexander E. Urban, Philippe Mourrain

    Published 2019
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  13. 13
    Integrated systems analysis reveals a molecular network underlying autism spectrum disorders

    Integrated systems analysis reveals a molecular network underlying autism spectrum disorders by Jingjing Li, Minyi Shi, Zhihai Ma, Shuchun Zhao, Ghia Euskirchen, Jennifer Ziskin, Alexander E. Urban, Joachim Hallmayer, M Snyder

    Published 2014
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  14. 14
    Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome

    Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome by Jia Qian Wu, Jiang Du, Joel Rozowsky, Zhengdong Zhang, Alexander E. Urban, Ghia Euskirchen, Sherman M. Weissman, Mark Gerstein, M Snyder

    Published 2008
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  15. 15
    Characterizing regression in Phelan McDermid Syndrome (22q13 deletion syndrome)

    Characterizing regression in Phelan McDermid Syndrome (22q13 deletion syndrome) by Gillian Reierson, Jon Bernstein, Wendy Froehlich-Santino, Alexander E. Urban, Carolin Purmann, Sean Berquist, Joshua T. Jordan, Ruth O’Hara, Joachim Hallmayer

    Published 2017
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  16. 16
    Local and global chromatin interactions are altered by large genomic deletions associated with human brain development

    Local and global chromatin interactions are altered by large genomic deletions associated with human brain development by Xianglong Zhang, Ying Zhang, Xiaowei Zhu, Carolin Purmann, Michael S. Haney, Thomas Ward, Arineh Khechaduri, Jie Yao, Sherman M. Weissman, Alexander E. Urban

    Published 2018
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  17. 17
    Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome

    Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome by Jan O. Korbel, Alexander E. Urban, Fabian Grubert, Jiang Du, Thomas Royce, Peter Starr, Guoneng Zhong, Beverly S. Emanuel, Sherman M. Weissman, M Snyder, Mark Gerstein

    Published 2007
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  18. 18
    High-Resolution Copy-Number Variation Map Reflects Human Olfactory Receptor Diversity and Evolution

    High-Resolution Copy-Number Variation Map Reflects Human Olfactory Receptor Diversity and Evolution by Yehudit Hasin-Brumshtein, Tsviya Olender, Miriam Khen, Claudia Gonzaga‐Jauregui, Philip M. Kim, Alexander E. Urban, M Snyder, Mark Gerstein, Doron Lancet, Jan O. Korbel

    Published 2008
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  19. 19
    EBNA1 regulates cellular gene expression by binding cellular promoters

    EBNA1 regulates cellular gene expression by binding cellular promoters by Allon Canaan, Izhak Haviv, Alexander E. Urban, Vincent Schulz, Steve Hartman, Zhengdong Zhang, Dean Palejev, Albert Deisseroth, Jill Lacy, M Snyder, Mark Gerstein, Sherman M. Weissman

    Published 2009
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  20. 20
    Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

    Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history by Philip M. Kim, Hugo Y. K. Lam, Alexander E. Urban, Jan O. Korbel, Jason P. Affourtit, Fabian Grubert, Xueying Chen, Sherman M. Weissman, M Snyder, Mark Gerstein

    Published 2008
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