Search Results - Aleksandar Milosavljevic

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  1. 1
    ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads

    ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads by Christopher A. Miller, Oliver Hampton, Cristian Coarfa, Aleksandar Milosavljevic

    Published 2011
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  2. 2
    Discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors

    Discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors by Christopher A. Miller, Stephen H. Settle, Erik P. Sulman, Kenneth Aldape, Aleksandar Milosavljevic

    Published 2011
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  3. 3
    Papillary Fibroelastomas: 16-Year Single-Center Experience

    Papillary Fibroelastomas: 16-Year Single-Center Experience by Strahinja Mrvić, Ranko Zdravković, Andrej Preveden, Novica Kalinić, Ilija Bjeljac, Aleksandar Milosavljević, Mirko Todić

    Published 2025
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  4. 4
    Analysis of MicroRNA Expression in the Prepubertal Testis

    Analysis of MicroRNA Expression in the Prepubertal Testis by Gregory M. Buchold, Cristian Coarfa, Jong Kim, Aleksandar Milosavljevic, Preethi H. Gunaratne, Martin M. Matzuk

    Published 2010
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  5. 5
    mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities

    mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities by Jun Ma, Cristian Coarfa, Xiang Qin, Penelope E. Bonnen, Aleksandar Milosavljevic, James Versalovic, Kjersti M. Aagaard

    Published 2014
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  6. 6
    CDKN2D-WDFY2 Is a Cancer-Specific Fusion Gene Recurrent in High-Grade Serous Ovarian Carcinoma

    CDKN2D-WDFY2 Is a Cancer-Specific Fusion Gene Recurrent in High-Grade Serous Ovarian Carcinoma by K. P. Kannan, Cristian Coarfa, Kimal Rajapakshe, Shannon M. Hawkins, Martin M. Matzuk, Aleksandar Milosavljevic, Laising Yen

    Published 2014
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  7. 7
    An integrative variant analysis suite for whole exome next-generation sequencing data

    An integrative variant analysis suite for whole exome next-generation sequencing data by Danny Challis, Jin Yu, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu

    Published 2012
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  8. 8
    Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties

    Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties by Albino Bacolla, Jacquelynn E. Larson, Jack Collins, Jian Li, Aleksandar Milosavljevic, Peter D. Stenson, D.N. Cooper, Robert D. Wells

    Published 2008
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  9. 9
    Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs

    Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs by Viren Amin, R. Alan Harris, Vitor Onuchic, Andrew R. Jackson, Tim Charnecki, Sameer Paithankar, Sai Lakshmi Subramanian, Kevin Riehle, Cristian Coarfa, Aleksandar Milosavljevic

    Published 2015
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  10. 10
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing

    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing by Hyo Won Ahn, Ryan D. Morin, Han Zhao, R. Alan Harris, Cristian Coarfa, Zi‐Jiang Chen, Aleksandar Milosavljevic, Marco A. Marra, Aleksandar Rajkovic

    Published 2010
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  11. 11
    Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing

    Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing by Govindarajan Kunde-Ramamoorthy, Cristian Coarfa, Eleonora Laritsky, Noah J. Kessler, R. Alan Harris, Mingchu Xu, Rui Chen, Lanlan Shen, Aleksandar Milosavljevic, Robert A. Waterland

    Published 2014
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  12. 12
    Atlas2 Cloud: a framework for personal genome analysis in the cloud

    Atlas2 Cloud: a framework for personal genome analysis in the cloud by Uday S. Evani, Danny Challis, Jin Yu, Andrew R. Jackson, Sameer Paithankar, Matthew N. Bainbridge, Adinarayana Jakkamsetti, Peter Pham, Cristian Coarfa, Aleksandar Milosavljevic, Fuli Yu

    Published 2012
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  13. 13
    Recurrent <i>BCAM-AKT2</i> fusion gene leads to a constitutively activated AKT2 fusion kinase in high-grade serous ovarian carcinoma

    Recurrent <i>BCAM-AKT2</i> fusion gene leads to a constitutively activated AKT2 fusion kinase in high-grade serous ovarian carcinoma by K. P. Kannan, Cristian Coarfa, Pei-Wen Chao, Liming Luo, Yan Wang, Amy E. Brinegar, Shannon M. Hawkins, Aleksandar Milosavljevic, Martin M. Matzuk, Laising Yen

    Published 2015
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  14. 14
    exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling

    exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling by Joel Rozowsky, Robert R. Kitchen, Jonathan J. Park, Timur R. Galeev, James A. Diao, Jonathan Warrell, William Thistlethwaite, Sai Lakshmi Subramanian, Aleksandar Milosavljevic, Mark Gerstein

    Published 2019
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  15. 15
    Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types

    Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types by Vitor Onuchic, Ryan J. Hartmaier, David N. Boone, Michael L. Samuels, Ronak Y. Patel, Wendy White, Vesna D. Garovic, Steffi Oesterreich, Matt E. Roth, Adrian V. Lee, Aleksandar Milosavljevic

    Published 2016
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  16. 16
    A Genome-Wide Search for Promoters That Respond to Increased MYCN Reveals Both New Oncogenic and Tumor Suppressor MicroRNAs Associated with Aggressive Neuroblastoma

    A Genome-Wide Search for Promoters That Respond to Increased MYCN Reveals Both New Oncogenic and Tumor Suppressor MicroRNAs Associated with Aggressive Neuroblastoma by Jason M. Shohet, Rajib Ghosh, Cristian Coarfa, Andrew D. Ludwig, Ashley Benham, Zaowen Chen, Danielle Patterson, Eveline Barbieri, Pieter Mestdagh, Denae N. Sikorski, Aleksandar Milosavljevic, Eugene S. Kim, Preethi H. Gunaratne

    Published 2011
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  17. 17
    Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

    Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain by Preethi H. Gunaratne, Ya‐Chi Lin, Ashley Benham, Jenny Drnevich, Cristian Coarfa, Jayantha B. Tennakoon, Chad J. Creighton, Jong H. Kim, Aleksandar Milosavljevic, Mick Watson, Sam Griffiths‐Jones, David F. Clayton

    Published 2011
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  18. 18
    Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood

    Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood by Matthew N Davies, Manuela Volta, Ruth Pidsley, Katie Lunnon, Abhishek Dixit, Simon Lovestone, Cristian Coarfa, R. Alan Harris, Aleksandar Milosavljevic, Claire Troakes, Safa Al‐Sarraj, Richard Dobson, Leonard C. Schalkwyk, Jonathan Mill

    Published 2012
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  19. 19
    A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

    A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy by Kjersti M. Aagaard, Kevin Riehle, Jun Ma, Nicola Segata, Toni-Ann Mistretta, Cristian Coarfa, Sabeen Raza, Sean Rosenbaum, Ignatia Van den Veyver, Aleksandar Milosavljevic, Dirk Gevers, Curtis Huttenhower, Joseph F. Petrosino, James Versalovic

    Published 2012
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  20. 20
    Evolutionary Breakpoints in the Gibbon Suggest Association between Cytosine Methylation and Karyotype Evolution

    Evolutionary Breakpoints in the Gibbon Suggest Association between Cytosine Methylation and Karyotype Evolution by Lucia Carbone, R. Alan Harris, Gery M. Vessere, Alan R. Mootnick, Sean Humphray, Jane Rogers, Sung K. Kim, Jeffrey D. Wall, David I. K. Martin, Jerzy Jurka, Aleksandar Milosavljevic, Pieter J. de Jong

    Published 2009
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