Zoekresultaten - Aevermann, Brian

Comparative analysis of the small heat shock proteins in three angiosperm genomes identifies new subfamilies and reveals diverse evolutionary patterns door Waters, Elizabeth R., Aevermann, Brian D., Sanders-Reed, Zipporah

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Cell type matching in single-cell RNA-sequencing data using FR-Match door Zhang, Yun, Aevermann, Brian, Gala, Rohan, Scheuermann, Richard H.

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The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness door Abramson, Bradley W, Novotny, Mark, Hartwick, Nolan T, Colt, Kelly, Aevermann, Brian D, Scheuermann, Richard H, Michael, Todd P

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FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test door Zhang, Yun, Aevermann, Brian D, Bakken, Trygve E, Miller, Jeremy A, Hodge, Rebecca D, Lein, Ed S, Scheuermann, Richard H

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A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing door Aevermann, Brian, Zhang, Yun, Novotny, Mark, Keshk, Mohamed, Bakken, Trygve, Miller, Jeremy, Hodge, Rebecca, Lelieveldt, Boudewijn, Lein, Ed, Scheuermann, Richard H.

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Cell type discovery using single-cell transcriptomics: implications for ontological representation door Aevermann, Brian D, Novotny, Mark, Bakken, Trygve, Miller, Jeremy A, Diehl, Alexander D, Osumi-Sutherland, David, Lasken, Roger S, Lein, Ed S, Scheuermann, Richard H

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Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans door Lee, Alexandra J., Das, Suman R., Wang, Wei, Fitzgerald, Theresa, Pickett, Brett E., Aevermann, Brian D., Topham, David J., Falsey, Ann R., Scheuermann, Richard H.

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Cell type discovery and representation in the era of high-content single cell phenotyping door Bakken, Trygve, Cowell, Lindsay, Aevermann, Brian D., Novotny, Mark, Hodge, Rebecca, Miller, Jeremy A., Lee, Alexandra, Chang, Ivan, McCorrison, Jamison, Pulendran, Bali, Qian, Yu, Schork, Nicholas J., Lasken, Roger S., Lein, Ed S., Scheuermann, Richard H.

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PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX door Aevermann, Brian, McCorrison, Jamison, Venepally, Pratap, Hodge, Rebecca, Bakken, Trygve, Miller, Jeremy, Novotny, Mark, Tran, Danny N., Diez-Fuertes, Francisco, Christiansen, Lena, Zhang, Fan, Steemers, Frank, Lasken, Roger S., Lein, Ed, Schork, Nicholas, Scheuermann, Richard H.

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Machine Learning-Based Single Cell and Integrative Analysis Reveals That Baseline mDC Predisposition Correlates With Hepatitis B Vaccine Antibody Response door Aevermann, Brian D., Shannon, Casey P., Novotny, Mark, Ben-Othman, Rym, Cai, Bing, Zhang, Yun, Ye, Jamie C., Kobor, Michael S., Gladish, Nicole, Lee, Amy Huei-Yi, Blimkie, Travis M., Hancock, Robert E., Llibre, Alba, Duffy, Darragh, Koff, Wayne C., Sadarangani, Manish, Tebbutt, Scott J., Kollmann, Tobias R., Scheuermann, Richard H.

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Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons door Krishnaswami, Suguna Rani, Grindberg, Rashel V, Novotny, Mark, Venepally, Pratap, Lacar, Benjamin, Bhutani, Kunal, Linker, Sara B, Pham, Son, Erwin, Jennifer A, Miller, Jeremy A, Hodge, Rebecca, McCarthy, James K, Kelder, Martin, McCorrison, Jamison, Aevermann, Brian D, Fuertes, Francisco Diez, Scheuermann, Richard H, Lee, Jun, Lein, Ed S, Schork, Nicholas, McConnell, Michael J, Gage, Fred H, Lasken, Roger S

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Influenza Research Database: An integrated bioinformatics resource for influenza virus research door Zhang, Yun, Aevermann, Brian D., Anderson, Tavis K., Burke, David F., Dauphin, Gwenaelle, Gu, Zhiping, He, Sherry, Kumar, Sanjeev, Larsen, Christopher N., Lee, Alexandra J., Li, Xiaomei, Macken, Catherine, Mahaffey, Colin, Pickett, Brett E., Reardon, Brian, Smith, Thomas, Stewart, Lucy, Suloway, Christian, Sun, Guangyu, Tong, Lei, Vincent, Amy L., Walters, Bryan, Zaremba, Sam, Zhao, Hongtao, Zhou, Liwei, Zmasek, Christian, Klem, Edward B., Scheuermann, Richard H.

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Single-nucleus and single-cell transcriptomes compared in matched cortical cell types door Bakken, Trygve E., Hodge, Rebecca D., Miller, Jeremy A., Yao, Zizhen, Nguyen, Thuc Nghi, Aevermann, Brian, Barkan, Eliza, Bertagnolli, Darren, Casper, Tamara, Dee, Nick, Garren, Emma, Goldy, Jeff, Graybuck, Lucas T., Kroll, Matthew, Lasken, Roger S., Lathia, Kanan, Parry, Sheana, Rimorin, Christine, Scheuermann, Richard H., Schork, Nicholas J., Shehata, Soraya I., Tieu, Michael, Phillips, John W., Bernard, Amy, Smith, Kimberly A., Zeng, Hongkui, Lein, Ed S., Tasic, Bosiljka

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Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons door Hodge, Rebecca D., Miller, Jeremy A., Novotny, Mark, Kalmbach, Brian E., Ting, Jonathan T., Bakken, Trygve E., Aevermann, Brian D., Barkan, Eliza R., Berkowitz-Cerasano, Madeline L., Cobbs, Charles, Diez-Fuertes, Francisco, Ding, Song-Lin, McCorrison, Jamison, Schork, Nicholas J., Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Yanny, Anna Marie, Steemers, Frank J., Phillips, John W., Bernard, Amy, Koch, Christof, Lasken, Roger S., Scheuermann, Richard H., Lein, Ed S.

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Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type door Boldog, Eszter, Bakken, Trygve E., Hodge, Rebecca D., Novotny, Mark, Aevermann, Brian D., Baka, Judith, Bordé, Sándor, Close, Jennie L., Diez-Fuertes, Francisco, Ding, Song-Lin, Faragó, Nóra, Kocsis, Ágnes K., Kovács, Balázs, Maltzer, Zoe, McCorrison, Jamison M., Miller, Jeremy A., Molnár, Gábor, Oláh, Gáspár, Ozsvár, Attila, Rózsa, Márton, Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Wall, Abby, Puskás, László G., Barzó, Pál, Steemers, Frank J., Schork, Nicholas J., Scheuermann, Richard H., Lasken, Roger S., Lein, Ed S., Tamás, Gábor

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Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis door Huang, Ni, Perez, Paola, Kato, Takafumi, Mikami, Yu, Okuda, Kenichi, Gilmore, Rodney C., Domínguez Conde, Cecilia, Gasmi, Billel, Stein, Sydney, Beach, Margaret, Pelayo, Eileen, Maldonado, Jose, LaFont, Bernard, Padilla, Ricardo, Murrah, Valerie, Maile, Robert, Lovell, Will, Wallet, Shannon, Bowman, Natalie M., Meinig, Suzanne L, Wolfgang, Matthew C, Choudhury, Saibyasachi N., Novotny, Mark, Aevermann, Brian D, Scheuermann, Richard, Cannon, Gabrielle, Anderson, Carlton, Marchesan, Julie, Bush, Mandy, Freire, Marcelo, Kimple, Adam, Herr, Daniel L., Rabin, Joseph, Grazioli, Alison, French, Benjamin N., Pranzatelli, Thomas, Chiorini, John A., Kleiner, David E., Pittaluga, Stefania, Hewitt, Stephen, Burbelo, Peter D., Chertow, Daniel, Frank, Karen, Lee, Janice, Boucher, Richard C., Teichmann, Sarah A., Warner, Blake M., Byrd, Kevin M.

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Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults door Ben-Othman, Rym, Cai, Bing, Liu, Aaron C., Varankovich, Natallia, He, Daniel, Blimkie, Travis M., Lee, Amy H., Gill, Erin E., Novotny, Mark, Aevermann, Brian, Drissler, Sibyl, Shannon, Casey P., McCann, Sarah, Marty, Kim, Bjornson, Gordean, Edgar, Rachel D., Lin, David Tse Shen, Gladish, Nicole, Maclsaac, Julia, Amenyogbe, Nelly, Chan, Queenie, Llibre, Alba, Collin, Joyce, Landais, Elise, Le, Khoa, Reiss, Samantha M., Koff, Wayne C., Havenar-Daughton, Colin, Heran, Manraj, Sangha, Bippan, Walt, David, Krajden, Mel, Crotty, Shane, Sok, Devin, Briney, Bryan, Burton, Dennis R., Duffy, Darragh, Foster, Leonard J., Mohn, William W., Kobor, Michael S., Tebbutt, Scott J., Brinkman, Ryan R., Scheuermann, Richard H., Hancock, Robert E. W., Kollmann, Tobias R., Sadarangani, Manish

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SARS-CoV-2 infection of the oral cavity and saliva door Huang, Ni, Pérez, Paola, Kato, Takafumi, Mikami, Yu, Okuda, Kenichi, Gilmore, Rodney C., Conde, Cecilia Domínguez, Gasmi, Billel, Stein, Sydney, Beach, Margaret, Pelayo, Eileen, Maldonado, Jose O., Lafont, Bernard A., Jang, Shyh-Ing, Nasir, Nadia, Padilla, Ricardo J., Murrah, Valerie A., Maile, Robert, Lovell, William, Wallet, Shannon M., Bowman, Natalie M., Meinig, Suzanne L., Wolfgang, Matthew C., Choudhury, Saibyasachi N., Novotny, Mark, Aevermann, Brian D., Scheuermann, Richard H., Cannon, Gabrielle, Anderson, Carlton W., Lee, Rhianna E., Marchesan, Julie T., Bush, Mandy, Freire, Marcelo, Kimple, Adam J., Herr, Daniel L., Rabin, Joseph, Grazioli, Alison, Das, Sanchita, French, Benjamin N., Pranzatelli, Thomas, Chiorini, John A., Kleiner, David E., Pittaluga, Stefania, Hewitt, Stephen M., Burbelo, Peter D., Chertow, Daniel, Frank, Karen, Lee, Janice, Boucher, Richard C., Teichmann, Sarah A., Warner, Blake M., Byrd, Kevin M.

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Conserved cell types with divergent features in human versus mouse cortex door Hodge, Rebecca D, Bakken, Trygve E, Miller, Jeremy A, Smith, Kimberly A, Barkan, Eliza R, Graybuck, Lucas T, Close, Jennie L, Long, Brian, Johansen, Nelson, Penn, Osnat, Yao, Zizhen, Eggermont, Jeroen, Hollt, Thomas, Levi, Boaz P, Shehata, Soraya I, Aevermann, Brian, Beller, Allison, Bertagnolli, Darren, Brouner, Krissy, Casper, Tamara, Cobbs, Charles, Dalley, Rachel, Dee, Nick, Ding, Song-Lin, Ellenbogen, Richard G, Fong, Olivia, Garren, Emma, Goldy, Jeff, Gwinn, Ryder P, Hirschstein, Daniel, Keene, C Dirk, Keshk, Mohamed, Ko, Andrew L, Lathia, Kanan, Mahfouz, Ahmed, Maltzer, Zoe, McGraw, Medea, Nguyen, Thuc Nghi, Nyhus, Julie, Ojemann, Jeffrey G, Oldre, Aaron, Parry, Sheana, Reynolds, Shannon, Rimorin, Christine, Shapovalova, Nadiya V, Somasundaram, Saroja, Szafer, Aaron, Thomsen, Elliot R, Tieu, Michael, Quon, Gerald, Scheuermann, Richard H, Yuste, Rafael, Sunkin, Susan M, Lelieveldt, Boudewijn, Feng, David, Ng, Lydia, Bernard, Amy, Hawrylycz, Michael, Phillips, John W., Tasic, Bosiljka, Zeng, Hongkui, Jones, Allan R, Koch, Christof, Lein, Ed S

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A comprehensive collection of systems biology data characterizing the host response to viral infection door Aevermann, Brian D., Pickett, Brett E., Kumar, Sanjeev, Klem, Edward B., Agnihothram, Sudhakar, Askovich, Peter S., Bankhead, Armand, Bolles, Meagen, Carter, Victoria, Chang, Jean, Clauss, Therese R.W., Dash, Pradyot, Diercks, Alan H., Eisfeld, Amie J., Ellis, Amy, Fan, Shufang, Ferris, Martin T., Gralinski, Lisa E., Green, Richard R., Gritsenko, Marina A., Hatta, Masato, Heegel, Robert A., Jacobs, Jon M., Jeng, Sophia, Josset, Laurence, Kaiser, Shari M., Kelly, Sara, Law, G. Lynn, Li, Chengjun, Li, Jiangning, Long, Casey, Luna, Maria L., Matzke, Melissa, McDermott, Jason, Menachery, Vineet, Metz, Thomas O., Mitchell, Hugh, Monroe, Matthew E., Navarro, Garnet, Neumann, Gabriele, Podyminogin, Rebecca L., Purvine, Samuel O., Rosenberger, Carrie M., Sanders, Catherine J., Schepmoes, Athena A., Shukla, Anil K., Sims, Amy, Sova, Pavel, Tam, Vincent C., Tchitchek, Nicolas, Thomas, Paul G., Tilton, Susan C., Totura, Allison, Wang, Jing, Webb-Robertson, Bobbie-Jo, Wen, Ji, Weiss, Jeffrey M., Yang, Feng, Yount, Boyd, Zhang, Qibin, McWeeney, Shannon, Smith, Richard D., Waters, Katrina M., Kawaoka, Yoshihiro, Baric, Ralph, Aderem, Alan, Katze, Michael G., Scheuermann, Richard H.

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