Search Results - Adam Frankish

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  1. 1
    Quantifying the mechanisms of domain gain in animal proteins

    Quantifying the mechanisms of domain gain in animal proteins by Marija Buljan, Adam Frankish, Alex Bateman

    Published 2010
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  2. 2
    Functional transcriptomics in the post-ENCODE era

    Functional transcriptomics in the post-ENCODE era by Jonathan M. Mudge, Adam Frankish, Jennifer Harrow

    Published 2013
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  3. 3
    Progress, Challenges, and Surprises in Annotating the Human Genome

    Progress, Challenges, and Surprises in Annotating the Human Genome by Daniel R. Zerbino, Adam Frankish, Paul Flicek

    Published 2020
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  4. 4
    Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

    Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene by Mar González-Porta, Adam Frankish, Johan Rung, Jennifer Harrow, Alvis Brāzma

    Published 2013
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  5. 5
    Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

    Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates by Zhengdong D. Zhang, Adam Frankish, Toby Hunt, Jennifer Harrow, Mark Gerstein

    Published 2010
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  6. 6
    Towards a complete map of the human long non-coding RNA transcriptome

    Towards a complete map of the human long non-coding RNA transcriptome by Barbara Uszczyńska-Ratajczak, Julien Lagarde, Adam Frankish, Roderic Guigó, Rory Johnson

    Published 2018
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  7. 7
    Getting the Entire Message: Progress in Isoform Sequencing

    Getting the Entire Message: Progress in Isoform Sequencing by Simon A. Hardwick, Anoushka Joglekar, Paul Flicek, Adam Frankish, Hagen Tilgner

    Published 2019
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  8. 8
    Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay

    Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay by Dmitri D. Pervouchine, Iaroslav Popov, Andrew Berry, Beatrice Borsari, Adam Frankish, Roderic Guigó

    Published 2019
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  9. 9
    Genome annotation for clinical genomic diagnostics: strengths and weaknesses

    Genome annotation for clinical genomic diagnostics: strengths and weaknesses by Charles A. Steward, Alasdair Parker, Berge A. Minassian, Sanjay M. Sisodiya, Adam Frankish, Jennifer Harrow

    Published 2017
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  10. 10
    Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

    Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes by Suganthi Balasubramanian, Deyou Zheng, Yuen-Jong Liu, Gang Fang, Adam Frankish, Nicholas Carriero, R. Robilotto, Philip Cayting, Mark Gerstein

    Published 2009
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  11. 11
    Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

    Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment. by Vladimir B. Bajić, Michael R. Brent, Randall H. Brown, Adam Frankish, Jennifer Harrow, Uwe Ohler, Victor Solovyev, Sin Tan

    Published 2006
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  12. 12
    Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes

    Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes by Iakes Ezkurdia, David Juan, José Manuel Rodrı́guez, Adam Frankish, Mark Diekhans, Jennifer Harrow, Jesús Vázquez, Alfonso Valencia, Michael L. Tress

    Published 2014
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  13. 13
    The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates

    The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates by Jonathan M. Mudge, Adam Frankish, Julio Fernandez-Banet, Tyler Alioto, Thomas Derrien, C. Howald, Alexandre Reymond, Roderic Guigó, Tim Hubbard, Jennifer Harrow

    Published 2011
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  14. 14
    High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing

    High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing by Julien Lagarde, Barbara Uszczyńska-Ratajczak, Silvia Carbonell‐Morote, Sílvia Pérez-Lluch, Amaya Abad, Carrie Davis, T Gingeras, Adam Frankish, Jennifer Harrow, Roderic Guigó, Rory Johnson

    Published 2017
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  15. 15
    The Vertebrate Genome Annotation browser 10 years on

    The Vertebrate Genome Annotation browser 10 years on by Jennifer Harrow, Charles A. Steward, Adam Frankish, James Gilbert, José M. González, Jane Loveland, Jonathan M. Mudge, Dan Sheppard, Mark Thomas, Stephen J. Trevanion, Laurens Wilming

    Published 2013
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  16. 16
    Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

    Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction by Adam Frankish, Barbara Uszczyńska, Graham R. S. Ritchie, José M. González, Dmitri D. Pervouchine, Robert Petryszak, Jonathan M. Mudge, Nuno A. Fonseca, Alvis Brāzma, Roderic Guigó, Jennifer Harrow

    Published 2015
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  17. 17
    The GENCODE pseudogene resource

    The GENCODE pseudogene resource by Baikang Pei, Cristina Sisu, Adam Frankish, Cédric Howald, Lukas Habegger, Xinmeng Jasmine Mu, Rachel Harte, Suganthi Balasubramanian, Andrea Tanzer, Mark Diekhans, Alexandre Reymond, Tim Hubbard, Jennifer Harrow, Mark Gerstein

    Published 2012
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  18. 18
    Tracking and coordinating an international curation effort for the CCDS Project

    Tracking and coordinating an international curation effort for the CCDS Project by Rachel Harte, Catherine M. Farrell, Jane Loveland, Marie‐Marthe Suner, Laurens Wilming, Bronwen Aken, Daniel Barrell, Adam Frankish, Carl‐Johan Wallin, S. Searle, Mark Diekhans, Jennifer Harrow, Kim D. Pruitt

    Published 2012
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  19. 19
    Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

    Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution by Deyou Zheng, Adam Frankish, Robert Baertsch, Philipp Kapranov, Alexandre Reymond, Siew Woh Choo, Yontao Lu, France Denœud, Stylianos E. Antonarakis, M Snyder, Yijun Ruan, Chia‐Lin Wei, T Gingeras, Roderic Guigó, Jennifer Harrow, Mark Gerstein

    Published 2007
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  20. 20
    Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons

    Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons by If Barnes, Ximena Ibarra-Soria, Stephen Fitzgerald, José M. González, Claire Davidson, Matthew P. Hardy, Deepa Manthravadi, Laura Van Gerven, Mark Jorissen, Zhen Zeng, Mona Khan, Peter Mombaerts, Jennifer Harrow, Darren W. Logan, Adam Frankish

    Published 2020
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