Search Results - Adam D. Ewing

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  1. 1
    Methylartist: tools for visualizing modified bases from nanopore sequence data

    Methylartist: tools for visualizing modified bases from nanopore sequence data by Seth W. Cheetham, Michaela Kindlova, Adam D. Ewing

    Published 2022
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  2. 2
    RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

    RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection by Amie Radenbaugh, Singer Ma, Adam D. Ewing, Joshua M. Stuart, Jun Li, Jingchun Zhu, David Haussler

    Published 2014
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  3. 3
    Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome

    Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome by Robin‐Lee Troskie, Yohaann Jafrani, Tim R. Mercer, Adam D. Ewing, Geoffrey J. Faulkner, Seth W. Cheetham

    Published 2021
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  4. 4
    Multiscale imaging of basal cell dynamics in the functionally mature mammary gland

    Multiscale imaging of basal cell dynamics in the functionally mature mammary gland by Alexander J. Stevenson, Gilles Vanwalleghem, Teneale A. Stewart, Nicholas D. Condon, Bethan Lloyd‐Lewis, Natascia Marino, James W. Putney, Ethan K. Scott, Adam D. Ewing, Felicity M. Davis

    Published 2020
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  5. 5
    Global optimization of somatic variant identification in cancer genomes with a global community challenge

    Global optimization of somatic variant identification in cancer genomes with a global community challenge by Paul C. Boutros, Adam D. Ewing, Kyle Ellrott, Thea Norman, Kristen K. Dang, Yin Hu, Michael Kellen, Christine Suver, J Christopher Bare, Lincoln Stein, Paul T. Spellman, Gustavo Stolovitzky, Stephen Friend, Jake Lin, Joshua M. Stuart

    Published 2014
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  6. 6
    No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing

    No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing by Nathan Smits, Jay Rasmussen, Gabriela O. Bodea, Alberto A. Amarilla, Patricia Gerdes, Francisco J. Sánchez‐Luque, Prabha Ajjikuttira, Naphak Modhiran, Benjamin Liang, J Faivre, Ira W. Deveson, Alexander A. Khromykh, Daniel Watterson, Adam D. Ewing, Geoffrey J. Faulkner

    Published 2021
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  7. 7
    Molecular genetic analysis of candidate genes for glutaric aciduria type II in a cohort of patients from Queensland, Australia

    Molecular genetic analysis of candidate genes for glutaric aciduria type II in a cohort of patients from Queensland, Australia by Kalliope Demetriou, Janelle Nisbet, David Coman, Adam D. Ewing, Liza K. Phillips, Sally Smith, Michelle Lipke, Anita Inwood, Janette Spicer, Catherine Atthow, Urs Wilgen, Thomas Robertson, Avis McWhinney, Rebecca R. Swenson, Brayden Espley, Brianna Snowdon, James McGill, Kim Summers

    Published 2024
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  8. 8
    Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

    Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection by Adam D. Ewing, Kathleen E. Houlahan, Yin Hu, Kyle Ellrott, Cristian Caloian, Takafumi N. Yamaguchi, J Christopher Bare, Christine P’ng, Daryl Waggott, Veronica Y. Sabelnykova, Michael Kellen, Thea Norman, David Haussler, Stephen Friend, Gustavo Stolovitzky, Jake Lin, Joshua M. Stuart, Paul C. Boutros

    Published 2015
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  9. 9
    Repopulation of the brain with microglia-like cells following intraperitoneal bone marrow cell transfer in microglia-deficient mice.

    Repopulation of the brain with microglia-like cells following intraperitoneal bone marrow cell transfer in microglia-deficient mice. by Isis Taylor, Omkar L. Patkar, Yajun Liu, Sébastien Jacquelin, Ginell Ranpura, Dylan Carter‐Cusack, Adam D. Ewing, Nyoman D. Kurniawan, Mosi Li, Deepali Vasoya, Xin He, Owen Dando, Peter C. Kind, Giles E. Hardingham, Barry Bradford, Neil A. Mabbott, Lucas Lefèvre, Clare Pridans, Kim Summers, Katharine M. Irvine, David Hume

    Published 2025
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  10. 10
    Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution

    Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution by Adam D. Ewing, Anthony Gacita, Laura D. Wood, Florence Ma, Dongmei Xing, Min‐Sik Kim, Srikanth S. Manda, Gabriela Abril, Gavin Pereira, Alvin Makohon‐Moore, Leendert H. J. Looijenga, Ad Gillis, Ralph H. Hruban, Robert A. Anders, Katharine Romans, Akhilesh Pandey, Christine A. Iacobuzio‐Donahue, Bert Vogelstein, Kenneth W. Kinzler, Haig H. Kazazian, Szilvia Sólyom

    Published 2015
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  11. 11
    Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

    Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection by Anna Y. Lee, Adam D. Ewing, Kyle Ellrott, Yin Hu, Kathleen E. Houlahan, J Christopher Bare, Shadrielle M. G. Espiritu, Vincent Huang, Kristen K. Dang, Zechen Chong, Cristian Caloian, Takafumi N. Yamaguchi, Michael Kellen, Ken Chen, Thea Norman, Stephen Friend, Justin Guinney, Gustavo Stolovitzky, David Haussler, Jake Lin, Joshua M. Stuart, Paul C. Boutros

    Published 2018
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  12. 12
    Human-specific <i>NOTCH</i>-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

    Human-specific <i>NOTCH</i>-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis by Ian T. Fiddes, Gerrald A. Lodewijk, Meghan Mooring, Colleen M. Bosworth, Adam D. Ewing, Gary L. Mantalas, Adam M. Novak, Anouk van den Bout, Alex Bishara, Jimi L. Rosenkrantz, Ryan Lorig-Roach, Andrew R. Field, Maximillian Haeussler, Lotte Russo, Aparna Bhaduri, Tomasz J. Nowakowski, Alex A. Pollen, Max L. Dougherty, Xander Nuttle, Marie‐Claude Addor, Simon Zwolinski, Sol Katzman, Arnold Kreigstein, Evan E. Eichler, Sofie R. Salama, Frank M. J. Jacobs, David Haussler

    Published 2017
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  13. 13
    Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis

    Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis by Ian T. Fiddes, Gerrald A. Lodewijk, Meghan Mooring, Colleen M. Bosworth, Adam D. Ewing, Gary L. Mantalas, Adam M. Novak, Anouk van den Bout, Alex Bishara, Jimi L. Rosenkrantz, Ryan Lorig-Roach, Andrew R. Field, Maximilian Haeussler, Lotte Russo, Aparna Bhaduri, Tomasz J. Nowakowski, Alex A. Pollen, Max L. Dougherty, Xander Nuttle, Marie‐Claude Addor, Simon Zwolinski, Sol Katzman, Arnold R. Kriegstein, Evan E. Eichler, Sofie R. Salama, Frank M. J. Jacobs, David Haussler

    Published 2018
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  14. 14
    A community effort to create standards for evaluating tumor subclonal reconstruction

    A community effort to create standards for evaluating tumor subclonal reconstruction by Adriana Salcedo, Maxime Tarabichi, Shadrielle M. G. Espiritu, Amit G. Deshwar, Matei David, Nathan M. Wilson, Stefan C. Dentro, Jeff Wintersinger, Lydia Liu, Minjeong Ko, Srinivasan Sivanandan, Hongjiu Zhang, Kaiyi Zhu, Tai-Hsien Ou Yang, John Chilton, Alex Buchanan, Christopher M. Lalansingh, Christine P’ng, Catalina Anghel, Imaad Umar, Bernard Lo, William Y. Zou, Jared T. Simpson, Joshua M. Stuart, Dimitris Anastassiou, Yuanfang Guan, Adam D. Ewing, Kyle Ellrott, David C. Wedge, Quaid Morris, Peter Van Loo, Paul C. Boutros

    Published 2020
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