Ohcanbohtosat - İnanç Birol

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  1. 1
    Metabolic Control Analysis under Uncertainty: Framework Development and Case Studies

    Metabolic Control Analysis under Uncertainty: Framework Development and Case Studies Dahkki L WANG, İnanç Birol, Vassily Hatzimanikatis

    Almmustuhtton 2004
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  2. 2
    ntCard: a streaming algorithm for cardinality estimation in genomics data

    ntCard: a streaming algorithm for cardinality estimation in genomics data Dahkki Hamid Mohamadi, Hamza Khan, İnanç Birol

    Almmustuhtton 2017
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  3. 3
    ntSynt-viz: Visualizing synteny patterns across multiple genomes

    ntSynt-viz: Visualizing synteny patterns across multiple genomes Dahkki Lauren Coombe, René L. Warren, İnanç Birol

    Almmustuhtton 2025
    Viečča ollesdeavstta
    Pré-impressão
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  4. 4
    ABySS-Explorer: Visualizing Genome Sequence Assemblies

    ABySS-Explorer: Visualizing Genome Sequence Assemblies Dahkki Cydney Nielsen, Shaun D. Jackman, İnanç Birol, Steven J.M. Jones

    Almmustuhtton 2009
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  5. 5
    ARCS: scaffolding genome drafts with linked reads

    ARCS: scaffolding genome drafts with linked reads Dahkki Sarah Yeo, Lauren Coombe, René L. Warren, Justin Chu, İnanç Birol

    Almmustuhtton 2017
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  6. 6
    Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences

    Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences Dahkki Readman Chiu, Indhu‐Shree Rajan‐Babu, Jan M. Friedman, İnanç Birol

    Almmustuhtton 2021
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  7. 7
    ntLink: A Toolkit for <i>De Novo</i> Genome Assembly Scaffolding and Mapping Using Long Reads

    ntLink: A Toolkit for <i>De Novo</i> Genome Assembly Scaffolding and Mapping Using Long Reads Dahkki Lauren Coombe, René L. Warren, Johnathan Wong, Vladimir Nikolić, İnanç Birol

    Almmustuhtton 2023
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  8. 8
    Sealer: a scalable gap-closing application for finishing draft genomes

    Sealer: a scalable gap-closing application for finishing draft genomes Dahkki Daniel Paulino, René L. Warren, Benjamin P. Vandervalk, Anthony Raymond, Shaun D. Jackman, İnanç Birol

    Almmustuhtton 2015
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  9. 9
    mrsFAST: a cache-oblivious algorithm for short-read mapping

    mrsFAST: a cache-oblivious algorithm for short-read mapping Dahkki Faraz Hach, Fereydoun Hormozdiari, Can Alkan, Farhad Hormozdiari, İnanç Birol, Evan E. Eichler, S. Cenk Şahinalp

    Almmustuhtton 2010
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  10. 10
    ABySS: A parallel assembler for short read sequence data

    ABySS: A parallel assembler for short read sequence data Dahkki Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J.M. Jones, İnanç Birol

    Almmustuhtton 2009
    Viečča ollesdeavstta Viečča ollesdeavstta
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  11. 11
    Detection and characterization of novel sequence insertions using paired-end next-generation sequencing

    Detection and characterization of novel sequence insertions using paired-end next-generation sequencing Dahkki Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, İnanç Birol, Evan E. Eichler, S. Cenk Şahinalp

    Almmustuhtton 2010
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  12. 12
    RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

    RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes Dahkki Ka Ming Nip, Readman Chiu, Chen Yang, Justin Chu, Hamid Mohamadi, René L. Warren, İnanç Birol

    Almmustuhtton 2020
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  13. 13
    LongStitch: high-quality genome assembly correction and scaffolding using long reads

    LongStitch: high-quality genome assembly correction and scaffolding using long reads Dahkki Lauren Coombe, Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolić, René L. Warren, İnanç Birol

    Almmustuhtton 2021
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  14. 14
    Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

    Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 Dahkki Ka Ming Nip, Saber Hafezqorani, Kristina Gagalova, Readman Chiu, Chen Yang, René L. Warren, İnanç Birol

    Almmustuhtton 2023
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  15. 15
    ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

    ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers Dahkki Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, İnanç Birol, René L. Warren

    Almmustuhtton 2018
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  16. 16
    LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

    LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads Dahkki René L. Warren, Chen Yang, Benjamin P. Vandervalk, Bahar Behsaz, Albert Lagman, Steven J.M. Jones, İnanç Birol

    Almmustuhtton 2015
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  17. 17
    Replicated Landscape Genomics Identifies Evidence of Local Adaptation to Urbanization in Wood Frogs

    Replicated Landscape Genomics Identifies Evidence of Local Adaptation to Urbanization in Wood Frogs Dahkki Jared J. Homola, Cynthia S. Loftin, Kristina M. Cammen, Caren C. Helbing, İnanç Birol, Thomas F. Schultz, Michael T. Kinnison

    Almmustuhtton 2019
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  18. 18
    Linear time complexity de novo long read genome assembly with GoldRush

    Linear time complexity de novo long read genome assembly with GoldRush Dahkki Johnathan Wong, Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu, René L. Warren, İnanç Birol

    Almmustuhtton 2023
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  19. 19
    Large-scale profiling of microRNAs for The Cancer Genome Atlas

    Large-scale profiling of microRNAs for The Cancer Genome Atlas Dahkki Andy Chu, Gordon Robertson, Denise Brooks, Andrew J. Mungall, İnanç Birol, Robin Coope, Yussanne Ma, Steven J.M. Jones, Marco A. Marra

    Almmustuhtton 2015
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  20. 20
    JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

    JAGuaR: Junction Alignments to Genome for RNA-Seq Reads Dahkki Yaron S.N. Butterfield, Maayan Kreitzman, Nina Thiessen, Richard Corbett, Yisu Li, Johnson Pang, P. Yussanne, Steven J.M. Jones, İnanç Birol

    Almmustuhtton 2014
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